Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C09
         (584 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0398 - 3515439-3515573,3515965-3516516                           29   2.1  
08_01_0065 + 452383-452629,452733-452868,453049-453118,453237-45...    29   3.6  
08_02_1386 + 26646156-26646407,26646506-26646612,26646921-266470...    27   8.3  
07_01_0555 - 4125087-4125578                                           27   8.3  

>08_01_0398 - 3515439-3515573,3515965-3516516
          Length = 228

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
 Frame = -2

Query: 562 PRQITKILLTNDLTEDVA-LEAEILACEMIISYHPPIFAPLKSIV---QRSWKERVVSYL 395
           PR  T+ L+  DL +++A LEAE  AC   +      FA L  +V   Q S  +   S  
Sbjct: 142 PRSETEKLIA-DLEKEIANLEAENTACIRTLELRKKQFALLLHVVEELQISIDDEQRSIA 200

Query: 394 LEKRIALYSPHTSWDSVRGGVNDWLA 317
            E R A      S + V GG +D +A
Sbjct: 201 DELRAATEEQKMSIEEVSGGASDAMA 226


>08_01_0065 +
           452383-452629,452733-452868,453049-453118,453237-453330,
           453426-453639,453756-453897,454076-454246,454586-454780
          Length = 422

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -2

Query: 214 DAVNKIKELTRLSHVRIAV-AKGKSMTHSVQRVALCAGSGSSVLKGVDA 71
           DAV KIKE+T    V +AV A GK++T S Q        G +V+ G+ A
Sbjct: 295 DAVEKIKEITDGRGVDVAVEALGKALTFS-QCAKSVRDGGKAVMIGLAA 342


>08_02_1386 +
           26646156-26646407,26646506-26646612,26646921-26647053,
           26647162-26647356,26647906-26648259
          Length = 346

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = -2

Query: 334 VNDWLASAFFVAESKPILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVA 155
           +  W+A +  + + +P L++ NP   A   +  S  +P S  V  IKE      V+IA  
Sbjct: 190 MTSWIAPSALLPKMQPYLKNRNPRIRAKASMCFSKSVP-SLGVEGIKEYGMDKLVQIAAT 248

Query: 154 K 152
           +
Sbjct: 249 Q 249


>07_01_0555 - 4125087-4125578
          Length = 163

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 429 SVRGKNGLYLIY*KNESPCTRHILVGIVCEAGSMT 325
           +V G N L  +  + E+P  RH++V I  +AG  T
Sbjct: 26  NVAGNNVLLPLSNRTEAPTPRHVIVTISLDAGQNT 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,107,515
Number of Sequences: 37544
Number of extensions: 340585
Number of successful extensions: 734
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 718
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)