Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C09
(584 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC007654-1|AAH07654.1| 377|Homo sapiens NIF3L1 protein protein. 111 2e-24
AY251944-1|AAP84064.1| 252|Homo sapiens NIF3L1 isoform gamma pr... 111 2e-24
AY251943-1|AAP84063.1| 285|Homo sapiens NIF3L1 isoform beta pro... 111 2e-24
AK023378-1|BAB14551.1| 350|Homo sapiens protein ( Homo sapiens ... 111 2e-24
AF283538-1|AAG44846.1| 377|Homo sapiens NIF3L1 protein protein. 111 2e-24
AF060513-1|AAG43131.1| 350|Homo sapiens My018 protein protein. 111 2e-24
AC005037-3|AAY14724.1| 377|Homo sapiens unknown protein. 111 2e-24
AB038949-1|BAB32499.1| 350|Homo sapiens amyotrophic lateral scl... 111 2e-24
AF182416-1|AAG14952.1| 351|Homo sapiens MDS015 protein. 102 1e-21
AY338826-1|AAR08421.2| 2590|Homo sapiens DNA polymerase theta pr... 31 3.0
AY032677-1|AAK39635.1| 2724|Homo sapiens DNA polymerase theta pr... 31 3.0
AF052573-1|AAC33565.1| 1762|Homo sapiens DNA polymerase theta pr... 31 3.0
AB209867-1|BAD93104.1| 2214|Homo sapiens DNA polymerase theta va... 31 3.0
AF276423-1|AAK69431.1| 1412|Homo sapiens densin-180-like protein... 29 9.1
>BC007654-1|AAH07654.1| 377|Homo sapiens NIF3L1 protein protein.
Length = 377
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 54 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 113
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 114 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 161
Score = 102 bits (244), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -2
Query: 259 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 80
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 249 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 308
Query: 79 VDADLYLTGEMLHHDVLDATQKGITV 2
V+ADLYLTGEM HHD LDA +GI V
Sbjct: 309 VEADLYLTGEMSHHDTLDAASQGINV 334
>AY251944-1|AAP84064.1| 252|Homo sapiens NIF3L1 isoform gamma
protein.
Length = 252
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 54 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 113
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 114 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 161
>AY251943-1|AAP84063.1| 285|Homo sapiens NIF3L1 isoform beta
protein.
Length = 285
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 54 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 113
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 114 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 161
>AK023378-1|BAB14551.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ13316 fis, clone OVARC1001555, weakly similar to
NGG1-INTERACTING FACTOR 3. ).
Length = 350
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 27 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 86
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 87 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 134
Score = 102 bits (244), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -2
Query: 259 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 80
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 222 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 281
Query: 79 VDADLYLTGEMLHHDVLDATQKGITV 2
V+ADLYLTGEM HHD LDA +GI V
Sbjct: 282 VEADLYLTGEMSHHDTLDAASQGINV 307
>AF283538-1|AAG44846.1| 377|Homo sapiens NIF3L1 protein protein.
Length = 377
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 54 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 113
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 114 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 161
Score = 102 bits (244), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -2
Query: 259 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 80
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 249 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 308
Query: 79 VDADLYLTGEMLHHDVLDATQKGITV 2
V+ADLYLTGEM HHD LDA +GI V
Sbjct: 309 VEADLYLTGEMSHHDTLDAASQGINV 334
>AF060513-1|AAG43131.1| 350|Homo sapiens My018 protein protein.
Length = 350
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 27 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 86
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 87 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 134
Score = 102 bits (244), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -2
Query: 259 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 80
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 222 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 281
Query: 79 VDADLYLTGEMLHHDVLDATQKGITV 2
V+ADLYLTGEM HHD LDA +GI V
Sbjct: 282 VEADLYLTGEMSHHDTLDAASQGINV 307
>AC005037-3|AAY14724.1| 377|Homo sapiens unknown protein.
Length = 377
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 54 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 113
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 114 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 161
Score = 102 bits (244), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -2
Query: 259 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 80
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 249 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 308
Query: 79 VDADLYLTGEMLHHDVLDATQKGITV 2
V+ADLYLTGEM HHD LDA +GI V
Sbjct: 309 VEADLYLTGEMSHHDTLDAASQGINV 334
>AB038949-1|BAB32499.1| 350|Homo sapiens amyotrophic lateral
sclerosis 2 protein.
Length = 350
Score = 111 bits (267), Expect = 2e-24
Identities = 50/108 (46%), Positives = 68/108 (62%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVV 404
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I +WKER+V
Sbjct: 27 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRITWNTWKERLV 86
Query: 403 SYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 87 IRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 134
Score = 102 bits (244), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -2
Query: 259 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 80
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 222 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 281
Query: 79 VDADLYLTGEMLHHDVLDATQKGITV 2
V+ADLYLTGEM HHD LDA +GI V
Sbjct: 282 VEADLYLTGEMSHHDTLDAASQGINV 307
>AF182416-1|AAG14952.1| 351|Homo sapiens MDS015 protein.
Length = 351
Score = 102 bits (244), Expect = 1e-21
Identities = 47/86 (54%), Positives = 63/86 (73%)
Frame = -2
Query: 259 GAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKG 80
G GRL L + L+ +++IK +LSH+R+A+ G+++ V+ VALCAGSGSSVL+G
Sbjct: 223 GMGRLCTLDESVSLATMIDRIKRHLKLSHIRLALGVGRTLESQVKVVALCAGSGSSVLQG 282
Query: 79 VDADLYLTGEMLHHDVLDATQKGITV 2
V+ADLYLTGEM HHD LDA +GI V
Sbjct: 283 VEADLYLTGEMSHHDTLDAASQGINV 308
Score = 101 bits (243), Expect = 1e-21
Identities = 48/109 (44%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
Frame = -2
Query: 583 LLXEPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSI-VQRSWKERV 407
LL EP P + + LTNDLTE+V E ++I+SYHPPIF P+K I ++ +ER+
Sbjct: 27 LLVEPSPPHTVNTLFLTNDLTEEVMEEVLQKKADLILSYHPPIFRPMKRINLEHMGRERL 86
Query: 406 VSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDF 260
V LE R+ +YSPHT++D+ GVN+WLA S+PI S P++
Sbjct: 87 VIRALENRVGIYSPHTAYDAAPQGVNNWLAKGLGACTSRPIHPSKAPNY 135
>AY338826-1|AAR08421.2| 2590|Homo sapiens DNA polymerase theta
protein.
Length = 2590
Score = 31.1 bits (67), Expect = 3.0
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -2
Query: 361 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 194
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 861 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 919
Query: 193 ELTRLSHVRIAVAKGKSMTHS 131
E T +S + + K S S
Sbjct: 920 EHTFISQTKSSYKKLTSKNKS 940
>AY032677-1|AAK39635.1| 2724|Homo sapiens DNA polymerase theta
protein.
Length = 2724
Score = 31.1 bits (67), Expect = 3.0
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -2
Query: 361 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 194
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 995 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 1053
Query: 193 ELTRLSHVRIAVAKGKSMTHS 131
E T +S + + K S S
Sbjct: 1054 EHTFISQTKSSYKKLTSKNKS 1074
>AF052573-1|AAC33565.1| 1762|Homo sapiens DNA polymerase theta
protein.
Length = 1762
Score = 31.1 bits (67), Expect = 3.0
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -2
Query: 361 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 194
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 33 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 91
Query: 193 ELTRLSHVRIAVAKGKSMTHS 131
E T +S + + K S S
Sbjct: 92 EHTFISQTKSSYKKLTSKNKS 112
>AB209867-1|BAD93104.1| 2214|Homo sapiens DNA polymerase theta
variant protein.
Length = 2214
Score = 31.1 bits (67), Expect = 3.0
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Frame = -2
Query: 361 TSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAG----RLLHLSSGIPLSDAVNKIK 194
T W + R G+ + A+A V E++ ILQ + + G LLH SS L+ + +++K
Sbjct: 485 TIWVTGRKGLTEREAAALIVEEARMILQQDLVEMGVQWNPCALLH-SSTCSLTHSESEVK 543
Query: 193 ELTRLSHVRIAVAKGKSMTHS 131
E T +S + + K S S
Sbjct: 544 EHTFISQTKSSYKKLTSKNKS 564
>AF276423-1|AAK69431.1| 1412|Homo sapiens densin-180-like protein
protein.
Length = 1412
Score = 29.5 bits (63), Expect = 9.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -2
Query: 472 SYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTS 356
S H + P KS V R W+E+V+ ++ K++ P TS
Sbjct: 1179 SEHSLLDPPGKSKVPRDWREQVLRHIEAKKLEKKHPQTS 1217
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,886,425
Number of Sequences: 237096
Number of extensions: 1775308
Number of successful extensions: 7119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7118
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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