Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C09
(584 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46242-9|CAA86334.2| 491|Caenorhabditis elegans Hypothetical pr... 30 1.1
AC024214-12|AAF36072.2| 370|Caenorhabditis elegans Hypothetical... 29 2.4
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr... 27 7.4
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 27 7.4
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 27 7.4
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 27 9.8
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 27 9.8
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 27 9.8
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 27 9.8
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 27 9.8
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 27 9.8
>Z46242-9|CAA86334.2| 491|Caenorhabditis elegans Hypothetical
protein F35G12.12 protein.
Length = 491
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/67 (23%), Positives = 36/67 (53%)
Frame = -2
Query: 574 EPYTPRQITKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVVSYL 395
+ ++ ++ K+++ + T+D+ ++ +I+ E I S HP I + V+ KE +S L
Sbjct: 57 DDFSTSKLVKLIIGDISTKDLLVDHQIILLEFIPSAHPNILRHVVRTVRE--KEGAISLL 114
Query: 394 LEKRIAL 374
+A+
Sbjct: 115 KSSSVAI 121
>AC024214-12|AAF36072.2| 370|Caenorhabditis elegans Hypothetical
protein Y77E11A.2 protein.
Length = 370
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Frame = -2
Query: 388 KRIALYSPHTSWDSVRGGVNDWLASAFFVAESKPILQSNNPDFGAGRLLHLSSGIPLSDA 209
+++A Y P GG +LA+A V ++ PI+ N G+ L + P D
Sbjct: 105 EQLAQYLPEADLVISAGGDGTFLAAASVVNDNTPIIGINTDPIGSEGHLCVGGKNPPRDL 164
Query: 208 VNKI----KELTRLSHVRIAVAKGKSMTHSVQR 122
+ ++ + + + +R+ V + ++ S++R
Sbjct: 165 IERLVSGNLKWVQRTRIRVTVKESRNSIFSLKR 197
>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical
protein ZK430.5 protein.
Length = 1276
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = -2
Query: 232 SGIPLSDAVNKIKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSV 89
S +P+ ++N+ RLSH++ AV K +S+ + L SG+SV
Sbjct: 271 SNVPVGKSLNECDFPDRLSHIKNAVCKFESIIYVEAPGFLPYQSGTSV 318
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 199 IKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKGVDA 71
+K +TR S I+ + + + Q LCAGSG++ L + A
Sbjct: 2188 LKSVTRASLNSISSQRASNAGETAQPSVLCAGSGNAALLTIAA 2230
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 27.5 bits (58), Expect = 7.4
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 199 IKELTRLSHVRIAVAKGKSMTHSVQRVALCAGSGSSVLKGVDA 71
+K +TR S I+ + + + Q LCAGSG++ L + A
Sbjct: 2188 LKSVTRASLNSISSQRASNAGETAQPSVLCAGSGNAALLTIAA 2230
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 527 LNRRCGFGSRNSGV*DDYFISSSDICAFEVY 435
L ++C G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 527 LNRRCGFGSRNSGV*DDYFISSSDICAFEVY 435
L ++C G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 527 LNRRCGFGSRNSGV*DDYFISSSDICAFEVY 435
L ++C G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 527 LNRRCGFGSRNSGV*DDYFISSSDICAFEVY 435
L ++C G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 527 LNRRCGFGSRNSGV*DDYFISSSDICAFEVY 435
L ++C G+ DYFI DI FE++
Sbjct: 437 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 467
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 27.1 bits (57), Expect = 9.8
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 527 LNRRCGFGSRNSGV*DDYFISSSDICAFEVY 435
L ++C G+ DYFI DI FE++
Sbjct: 440 LVKKCNLTLDQKGIDRDYFIGVLDIAGFEIF 470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,629,105
Number of Sequences: 27780
Number of extensions: 288089
Number of successful extensions: 708
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -