Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C06
         (794 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    29   0.057
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    26   0.30 
AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory recept...    23   2.8  
AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory recept...    23   2.8  

>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 0.057
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
 Frame = +3

Query: 108 EIFFFVLALCAVFRNYTN-SERRHFENFLILTKT*QEILNATAKMLLYIFEVFNYINSKS 284
           ++ +F+LA   +   YTN S    F   LI  +T  EI++ T + L       + I +  
Sbjct: 165 DLVYFILAFACISIAYTNVSTDAFFYTCLIQIETQCEIVSDTLRNL-------DKIVTNG 217

Query: 285 KRSQTILFKSIVRCVRLFNSVALYVKLLS 371
            R+     K  + C+  +N +  Y K++S
Sbjct: 218 FRNVAESRKIFIECIEQYNVILRYTKIVS 246


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 430 FSWHFDYIKCIIYDFDCALVTFNTAF 507
           F+  +D + C+ Y FD A++   T+F
Sbjct: 464 FANFYDAMICVAYKFDAAMMALRTSF 489


>AM292365-1|CAL23177.1|  313|Tribolium castaneum gustatory receptor
           candidate 44 protein.
          Length = 313

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
 Frame = -2

Query: 610 LNNIKTKLRRF*PHL*HFVTYFF--------LAAFKILSKLRQRL 500
           L  I T L+R+   L  F+TYFF        L A KILSK+ + L
Sbjct: 66  LAKITTILQRYCSVLLVFLTYFFNILFRKKLLNAVKILSKIDETL 110


>AM292325-1|CAL23137.2|  309|Tribolium castaneum gustatory receptor
           candidate 4 protein.
          Length = 309

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
 Frame = -2

Query: 610 LNNIKTKLRRF*PHL*HFVTYFF--------LAAFKILSKLRQRL 500
           L  I T L+R+   L  F+TYFF        L A KILSK+ + L
Sbjct: 62  LAKITTILQRYCSVLLVFLTYFFNILFRKKLLNAVKILSKIDETL 106


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,793
Number of Sequences: 336
Number of extensions: 3892
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21583952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)