Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C06
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|...    32   0.11 
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   3.1  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   7.1  

>SPCC330.06c |||thioredoxin peroxidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 156

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 762 LGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 649
           LG  RSKR++ V+ + KV  + +E + T +  S ADK+
Sbjct: 115 LGPLRSKRYAAVVENGKVVKVFIENEVTDVDISSADKV 152


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 776 PICRRSEVSAPKGSPWSSL 720
           P+   S+ +APK SPW SL
Sbjct: 612 PVTSGSQTTAPKPSPWKSL 630


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 120 FVLALCAVFRNYTNSERRHFENFL--ILTKT*QEILNATAKMLLYIFEVFNYINSKSKRS 293
           F L L ++ +N T S  + +E F   I      E L  T+    YIF VF Y  S  K  
Sbjct: 502 FTLLLASLCKN-TTSASKIYELFSEPIPEVGHLESLMITSPSWSYIFNVFRYYISHLKPV 560

Query: 294 QTILFKS 314
           QT++  S
Sbjct: 561 QTVVTSS 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,060,015
Number of Sequences: 5004
Number of extensions: 59645
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)