Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C06
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    31   0.80 
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     29   3.2  
08_02_1171 + 24880363-24881355,24882553-24882702,24883505-248842...    28   9.8  

>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 19/46 (41%), Positives = 22/46 (47%)
 Frame = +3

Query: 657 RRENKTGQCHRAPHSDLEPCCQR*PWRTFWSGNLRAAADWCPGPXP 794
           RRE +T   H  PHSDL P   R P RT  + + R      P P P
Sbjct: 187 RREAETAHPHTQPHSDLSP---RTPRRTSAAASGRLQEKQAPPPLP 229


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -3

Query: 765 PLGGFRSKRFSMVIVDSKVQDLNVEPDGTGLSCSLADKI 649
           PL G  S  F+ +I  S +Q  +V+ DGT  SC + D I
Sbjct: 456 PLEGVGSAYFNELINRSMIQPADVQYDGTVQSCRVHDMI 494


>08_02_1171 +
           24880363-24881355,24882553-24882702,24883505-24884210,
           24885012-24885404,24885759-24885805,24886088-24886111
          Length = 770

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 198 SKLESFQNDVFHYSCNYEKRRKEPKQKKIFRATSRVSK 85
           S+L  F  D F    N + RR+EP++++  RA  R  K
Sbjct: 49  SRLREFARDRFRDPFNPDLRRREPRRRRRRRAPRRRRK 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,528,811
Number of Sequences: 37544
Number of extensions: 341320
Number of successful extensions: 680
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 680
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)