Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C05
(718 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 204 2e-51
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 159 5e-38
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 153 3e-36
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 151 1e-35
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 145 8e-34
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 134 2e-30
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 133 4e-30
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 129 8e-29
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 128 1e-28
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 123 4e-27
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 115 1e-24
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 111 1e-23
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 104 3e-21
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 95 2e-18
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 91 3e-17
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 73 9e-12
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 60 7e-08
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 54 4e-06
UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1; Staphy... 46 0.001
UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3; Desulf... 45 0.002
UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n... 43 0.009
UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4; Pyrobac... 42 0.020
UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga ... 42 0.020
UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1; Sulfol... 40 0.046
UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2; Sulfol... 40 0.046
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 40 0.061
UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1; Thermof... 40 0.081
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.14
UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;... 35 1.7
UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3; Sophophora|... 34 3.0
UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497 ... 34 4.0
UniRef50_A0Z0U9 Cluster: Beta-glucosidase; n=1; marine gamma pro... 34 4.0
UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n... 33 7.0
UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putati... 33 9.3
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 204 bits (498), Expect = 2e-51
Identities = 101/164 (61%), Positives = 119/164 (72%), Gaps = 1/164 (0%)
Frame = -3
Query: 650 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVR 471
N M+ HFHKDWQR V TWFNQPAR+ RR++ R P+RPIVRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 470 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 291
YHTKVRAGRGF+L E+R AG++ ARTIGI+VDPRRRNKS ESLQ NVQR+KEYR++LI
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 290 LFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPI 162
LFP K KG+++ EE KLATQL GP+MPV+ K AR I
Sbjct: 126 LFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVI 169
Score = 43.2 bits (97), Expect = 0.007
Identities = 24/38 (63%), Positives = 28/38 (73%)
Frame = -1
Query: 148 KNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPDDVTK 35
KNFKA+ LR AR+ A+L GIRAKR K+AAE DV K
Sbjct: 174 KNFKAFASLRMARANARLFGIRAKRAKEAAE--QDVEK 209
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 159 bits (387), Expect = 5e-38
Identities = 76/154 (49%), Positives = 106/154 (68%), Gaps = 1/154 (0%)
Frame = -3
Query: 656 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 477
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R PLRP+V T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 476 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 297
++Y+ KVRAG+GFTL E++ AG+ A TIGI+VD RR+N+S+E LQ NVQR+K Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 296 LILFP-KGKKVLKGEANEEERKLATQLRGPLMPV 198
L++FP + ++V G++ EE ATQ++G MP+
Sbjct: 122 LVVFPRRSRQVKAGDSTPEELANATQVQGDYMPI 155
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 153 bits (372), Expect = 3e-36
Identities = 72/135 (53%), Positives = 93/135 (68%), Gaps = 1/135 (0%)
Frame = -3
Query: 662 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRC 483
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR-AKKSRQLAPKPTELLRPLVHC 59
Query: 482 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 303
P+ RY +KVRAGRGFT +E++ AG++ +AR+ G+AVDPRRRN+ ES+ N+QR+ EY+
Sbjct: 60 PSERYKSKVRAGRGFTFQELKQAGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYK 119
Query: 302 ARLILFPKGK-KVLK 261
+RLI P K KVLK
Sbjct: 120 SRLIFLPDSKNKVLK 134
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 151 bits (367), Expect = 1e-35
Identities = 76/164 (46%), Positives = 104/164 (63%)
Frame = -3
Query: 656 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 477
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 476 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 297
+RY+TK+R+GRGFT+ E++AAGL +AR++GI VD RRRNKS ESL++NV+RIK Y+AR
Sbjct: 63 LRYNTKIRSGRGFTIEEVKAAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQAR 122
Query: 296 LILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARP 165
L++ PK K K + + A + ++P+ PA +P
Sbjct: 123 LVVIPKLTKKNKDKKVDLSNVEAVRQVQSVLPL--PAGTEAEKP 164
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 145 bits (352), Expect = 8e-34
Identities = 80/156 (51%), Positives = 100/156 (64%), Gaps = 7/156 (4%)
Frame = -3
Query: 662 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPL 501
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 500 RPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQ 321
RP V CPTVRY+ K R GRGF+L E++AAG+ P +ARTIGI VD RR+NKS E + INVQ
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQ 130
Query: 320 RIKEYRARLILFP-KGKKVLKGEANEEERKLATQLR 216
R+K Y ++L+LFP KK KG+A EEE K ATQ R
Sbjct: 131 RLKTYMSKLVLFPLNRKKPQKGDATEEEVKAATQDR 166
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 134 bits (325), Expect = 2e-30
Identities = 69/158 (43%), Positives = 99/158 (62%)
Frame = -3
Query: 635 NGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKV 456
N HF K WQ V+ F+Q ++ R+Q+R+ LRP+VR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 455 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKG 276
RAGRGFTL E++A G+ P +ARTIGI+VD RR+NKS E+ NV R++EY+++L++F K
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVIFDKK 129
Query: 275 KKVLKGEANEEERKLATQLRGPLMPVQQPAPKSVARPI 162
K + + E+ AT PV+QPAP+S R +
Sbjct: 130 TKASEVASFEQVDVSAT------FPVEQPAPESGLRAV 161
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 133 bits (322), Expect = 4e-30
Identities = 63/116 (54%), Positives = 82/116 (70%)
Frame = -3
Query: 626 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 447
FHKDWQR V+ F+QP R++RR++ R+ LRP+VRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 446 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPK 279
RGFTL E++ AG+ ART+GIAVD RR N S ESL NV R+K+Y+ARLILFP+
Sbjct: 90 RGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLILFPR 145
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 129 bits (311), Expect = 8e-29
Identities = 70/164 (42%), Positives = 96/164 (58%), Gaps = 5/164 (3%)
Frame = -3
Query: 656 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 477
K N +PN H K W RFVKT++NQPA + RR+Q R LRP+VR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 476 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 297
++Y++ + GRGF+L E++ AGLN FART+GI+VD RRRN + E L NV+R+K Y ++
Sbjct: 61 IKYNSVQKLGRGFSLIELKEAGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSK 120
Query: 296 LILFPK--GKK---VLKGEANEEERKLATQLRGPLMPVQQPAPK 180
L+L+P+ GK V+K NE Q P + Q PK
Sbjct: 121 LVLYPRVAGKPKNGVVKDSTNEVVAHPVAQNTNPEVLTFQRTPK 164
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 128 bits (309), Expect = 1e-28
Identities = 66/134 (49%), Positives = 86/134 (64%), Gaps = 1/134 (0%)
Frame = -3
Query: 650 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVR 471
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRPIV PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 470 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 291
Y+ K R GRGFTL E+ A G+N A +IGIAVD RR + S E+ QINV R+K+Y ++
Sbjct: 63 YNMKTRLGRGFTLEELSACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIV 122
Query: 290 LFP-KGKKVLKGEA 252
L P KGKK KG A
Sbjct: 123 LQPRKGKKTKKGFA 136
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 123 bits (297), Expect = 4e-27
Identities = 66/140 (47%), Positives = 83/140 (59%)
Frame = -3
Query: 686 PW*NSDVKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXX 507
PW ++M NN IPN H K W VKT+F+ PAR RR+ R
Sbjct: 16 PW--PFLEMVAKNNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEG 73
Query: 506 PLRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQIN 327
PLRPIVRCPTVRY+ K R GRGFT +E+ AAG +P AR GIAVD RR + ++ N
Sbjct: 74 PLRPIVRCPTVRYNMKTRLGRGFTPKELVAAGFDPALARFQGIAVDARRAHSKDAMVKQN 133
Query: 326 VQRIKEYRARLILFPKGKKV 267
V+R++ Y+ARLI KG+ V
Sbjct: 134 VERLQAYKARLIKVKKGETV 153
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 115 bits (276), Expect = 1e-24
Identities = 61/137 (44%), Positives = 82/137 (59%)
Frame = -3
Query: 662 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRC 483
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 482 PTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYR 303
P+ RY+ K+R GRGFTL+E++ AGL AR++G+AVD RR NK ESL +NV R+K Y
Sbjct: 60 PSRRYNYKLRFGRGFTLQELKVAGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYL 119
Query: 302 ARLILFPKGKKVLKGEA 252
++L+LFP+ K KG A
Sbjct: 120 SKLVLFPRKKHAKKGFA 136
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 111 bits (268), Expect = 1e-23
Identities = 55/126 (43%), Positives = 77/126 (61%)
Frame = -3
Query: 650 NNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVR 471
NN++PN H HK WQR+V+ FN+ +R +R+ R L P+V CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 470 YHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 291
Y+ K R G+GFTL EI+A L P AR+IGI VD RR+N+ ESL+ N +R+++Y L+
Sbjct: 64 YNYKTRLGKGFTLEEIKAVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLV 123
Query: 290 LFPKGK 273
+ P K
Sbjct: 124 MIPLKK 129
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 104 bits (249), Expect = 3e-21
Identities = 54/121 (44%), Positives = 70/121 (57%)
Frame = -3
Query: 626 FHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKVRAG 447
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLG 70
Query: 446 RGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKV 267
RGF+L+E+RAA ++ ARTIGIAVDPRR+ S E L N QR+ EY RL L K+
Sbjct: 71 RGFSLKELRAAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCLKSVSVKI 130
Query: 266 L 264
+
Sbjct: 131 V 131
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 95.1 bits (226), Expect = 2e-18
Identities = 44/90 (48%), Positives = 63/90 (70%)
Frame = -3
Query: 503 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINV 324
+RPIVRCPTVRYHTKVR GRGF+L EIR AG++ ARTI I+VDP+++ K E +
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPKKKKKKKERKKEKN 72
Query: 323 QRIKEYRARLILFPKGKKVLKGEANEEERK 234
+R+ E + I++PK +K + + +E +K
Sbjct: 73 ERVTETNQKDIIYPKREKEREKKGMKEGKK 102
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 90.6 bits (215), Expect = 3e-17
Identities = 57/158 (36%), Positives = 79/158 (50%)
Frame = -3
Query: 656 KGNNMIPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXPLRPIVRCPT 477
KGN+ +PN HF K + + P + R + LRPIVRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 476 VRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRAR 297
++Y+ R GRGFT E AGL+ AR +GIAVD RRR+ + E+ NV+RIK Y +
Sbjct: 60 IKYNRNERLGRGFTAAECEKAGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGK 119
Query: 296 LILFPKGKKVLKGEANEEERKLATQLRGPLMPVQQPAP 183
+ ++ K EA E K T+ +MP +P P
Sbjct: 120 ITIYESVK-----EARESGAKPYTK---EIMPFVKPKP 149
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 72.5 bits (170), Expect = 9e-12
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = -3
Query: 632 GHFHKDWQRFVKTWFNQPARRY-RRKQNRIXXXXXXXXXXXXXPLRPIVRCPTVRYHTKV 456
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 455 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSV 345
+ GRGF+++EI+ + + A + GI++D RR+ ++
Sbjct: 70 KLGRGFSIQEIKKSMIKLKTATSYGISIDKRRKKSNI 106
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 59.7 bits (138), Expect = 7e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = -3
Query: 641 IPNGHFHKDWQRFVKTWFNQPARRYRRK 558
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 54.0 bits (124), Expect = 4e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = -3
Query: 650 NNMIPNGHFHKDWQRFVKTWFNQPARRYRR 561
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein
L13e - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 86
Score = 46.0 bits (104), Expect = 0.001
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = -3
Query: 497 PIVRCPTVRYH----TKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQI 330
PIVR P +R H +R GRGF+ +E+ A GL+ A+ +G+ +D RRR +
Sbjct: 10 PIVRKPMLRKHGGLSPGLRVGRGFSKKELEAVGLDLKTAKKLGLRIDKRRRTIH----EW 65
Query: 329 NVQRIKEYRARL 294
NVQ +++Y ++
Sbjct: 66 NVQALRDYLTKI 77
>UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3;
Desulfurococcales|Rep: 50S ribosomal protein L13e -
Aeropyrum pernix
Length = 80
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = -3
Query: 458 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNK---SVESLQINVQRIKE 309
VR GRGF+L E+ AGL+ AR +G+ VD RRR +VE+L+ ++R++E
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLRE 75
>UniRef50_Q018B3 Cluster: Chromosome 05 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 05 contig 1, DNA
sequence - Ostreococcus tauri
Length = 527
Score = 42.7 bits (96), Expect = 0.009
Identities = 25/56 (44%), Positives = 28/56 (50%)
Frame = +1
Query: 358 RLRGSTAIPIVRANTGFNPAALISRRVNPLPARTLVWYRTVGHRTIGRNGPAAGRG 525
++R S VRA T S V P P R L YR VG TIGR+ PA GRG
Sbjct: 388 KIRVSLTTLAVRARTMAITRTFNSSSVKPRPRRVLKLYRCVGGCTIGRSAPATGRG 443
>UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4;
Pyrobaculum|Rep: 60S ribosomal protein L13 - Pyrobaculum
aerophilum
Length = 159
Score = 41.5 bits (93), Expect = 0.020
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Frame = -3
Query: 500 RPIVRCPTVRYH---TKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQ 333
+P+V+ P H K + GRGF++ E+RA GL+ AR +GI VD RR ++++
Sbjct: 6 KPLVKTPAKITHGGVVKWKYGRGFSIGELRALGLSVDQARLLGIPVDERRETSWPQNIE 64
>UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L13 -
Caldivirga maquilingensis IC-167
Length = 144
Score = 41.5 bits (93), Expect = 0.020
Identities = 21/57 (36%), Positives = 38/57 (66%)
Frame = -3
Query: 461 KVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 291
K++ GRGF++ EI+A L AR +GI VD RR++ + + NV+ ++EY ++++
Sbjct: 17 KMKQGRGFSISEIKAINLTVNEARLLGIPVDTRRKS----TWEWNVKALQEYVSKVV 69
>UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1;
Sulfolobus tokodaii|Rep: 50S ribosomal protein L13e -
Sulfolobus tokodaii
Length = 77
Score = 40.3 bits (90), Expect = 0.046
Identities = 18/68 (26%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = -3
Query: 503 LRPIVRCPTVRYHTK---VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQ 333
+ PIV+ P R+ + + G+GF+L+E++ +G + A+ + + +D RR+ E+++
Sbjct: 2 VEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVE 61
Query: 332 INVQRIKE 309
+ ++++KE
Sbjct: 62 V-LKKLKE 68
>UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2;
Sulfolobus solfataricus|Rep: 50S ribosomal protein L13e
- Sulfolobus solfataricus
Length = 79
Score = 40.3 bits (90), Expect = 0.046
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = -3
Query: 455 RAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARL 294
R GRGF++ E+ AGLN AR +GI VD RR KSV + NV+ +K++ +L
Sbjct: 25 RIGRGFSVGELEKAGLNINKARKLGIFVDIRR--KSVH--EENVETLKKFSEQL 74
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 39.9 bits (89), Expect = 0.061
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = -3
Query: 503 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGL 408
LRP+V T++Y+ KV +GFTL E++AAG+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKAAGI 83
>UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1;
Thermofilum pendens Hrk 5|Rep: 60S ribosomal protein L13
- Thermofilum pendens (strain Hrk 5)
Length = 157
Score = 39.5 bits (88), Expect = 0.081
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = -3
Query: 458 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRN---KSVESLQINVQRIKEY 306
++ GRGF+ E++A GL AR +GI VD RR+ ++VE+L+ ++ +KE+
Sbjct: 30 LKVGRGFSEGEVKALGLTVKEARLLGIYVDERRKTVHPENVEALRSWLKALKEH 83
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.14
Identities = 15/26 (57%), Positives = 21/26 (80%)
Frame = -3
Query: 497 PIVRCPTVRYHTKVRAGRGFTLREIR 420
PIV+C T++Y+ K RAGRGF L E++
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELK 72
>UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L13E - Ignicoccus hospitalis KIN4/I
Length = 96
Score = 35.1 bits (77), Expect = 1.7
Identities = 24/66 (36%), Positives = 39/66 (59%)
Frame = -3
Query: 503 LRPIVRCPTVRYHTKVRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINV 324
L P++R + K+R GRGF+ E+ A GL+ A +GI +D RR K+V + NV
Sbjct: 29 LTPVLRKDAGK-KPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRR--KTVH--EWNV 83
Query: 323 QRIKEY 306
+ +K++
Sbjct: 84 EALKKW 89
>UniRef50_Q7KTI0 Cluster: CG17608-PA, isoform A; n=3;
Sophophora|Rep: CG17608-PA, isoform A - Drosophila
melanogaster (Fruit fly)
Length = 271
Score = 34.3 bits (75), Expect = 3.0
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -3
Query: 374 VDPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEA---NEEERKLATQLRGPLM 204
+D R+ S+ SLQ + I+E +L+LFP+G + K + +A Q + P+
Sbjct: 141 IDRSRKTDSINSLQKEAKAIQERNCKLLLFPEGTRNSKDSLLPFKKGSFHIALQGKSPVQ 200
Query: 203 PV 198
PV
Sbjct: 201 PV 202
>UniRef50_UPI0000E49D21 Cluster: PREDICTED: similar to LOC495497
protein; n=3; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC495497 protein -
Strongylocentrotus purpuratus
Length = 802
Score = 33.9 bits (74), Expect = 4.0
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +3
Query: 411 SCGPNFTKSESSTGAYFSMVPNSWASHYRT*RPS-CRTWSYGLSFLYSILLSAVSSSWLV 587
SC P+ T S ST + P +H+ T P C WS+ SF Y A L
Sbjct: 367 SCPPSSTSS--STSSKQETPPCPVDNHFETGPPEKCHKWSFIFSFTYLAFFRAAGYFGLE 424
Query: 588 KP-SFNKSLPILVEMSI 635
KP SF+ + +L+ + +
Sbjct: 425 KPTSFSNVVQLLLTLKL 441
>UniRef50_A0Z0U9 Cluster: Beta-glucosidase; n=1; marine gamma
proteobacterium HTCC2080|Rep: Beta-glucosidase - marine
gamma proteobacterium HTCC2080
Length = 824
Score = 33.9 bits (74), Expect = 4.0
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 458 VRAGRGFTLREIRAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLI 291
V A G T RE++A G++ +FA T+ +A D R ++ ES + Q + Y ++
Sbjct: 153 VAAISGATAREVKATGIDWIFAPTVAVAQD-YRWGRTYESYSSDPQVVSSYAGGMV 207
>UniRef50_Q54070 Cluster: Poly(3-hydroxybutyrate) depolymerase; n=1;
Streptomyces exfoliatus|Rep: Poly(3-hydroxybutyrate)
depolymerase - Streptomyces exfoliatus (Streptomyces
hydrogenans)
Length = 488
Score = 33.1 bits (72), Expect = 7.0
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3
Query: 318 SLNIDLQ*FNRLVASTGIYSNSNRSGKYWVQSCGPNFTKSESS 446
++N DL + R + +Y NS+ SG WV GPN S +S
Sbjct: 143 AVNDDLATYYRDFGADVVYDNSSASGHAWVSPLGPNSCSSTTS 185
>UniRef50_Q4Y1F8 Cluster: Nucleolar GTP-binding protein 1, putative;
n=6; Plasmodium|Rep: Nucleolar GTP-binding protein 1,
putative - Plasmodium chabaudi
Length = 682
Score = 32.7 bits (71), Expect = 9.3
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 371 DPRRRNKSVESLQINVQRIKEYRARLILFPKGKKVLKGEAN 249
DP R+ + +S +QR K Y+ ++ + + KK KGEA+
Sbjct: 618 DPTRKMRIYQSTSTEIQRKKAYKLNIVAYRQIKKGTKGEAD 658
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,338,572
Number of Sequences: 1657284
Number of extensions: 13405849
Number of successful extensions: 35099
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35077
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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