Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_C04
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 1.0
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 1.8
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 27 1.8
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 1.8
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 27 2.4
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 27 3.1
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom... 27 3.1
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 25 7.2
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 25 7.2
SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.2
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/40 (25%), Positives = 20/40 (50%)
Frame = -2
Query: 524 FTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 405
++GH ++ NHF+ +GH +T +N+ +N
Sbjct: 242 YSGHNSPHTNYSASTPSFNHFNAAGHPTGNITPTLNSPNN 281
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 132 YVQNIPTYCLAHLWRCPVLNRSLCEWA 212
Y+QNIP +RC ++ ++C+W+
Sbjct: 466 YLQNIPIQKKYESYRCLFISGTICQWS 492
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = -2
Query: 563 EYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS 444
+YD++N DH H H + EA+ GHS
Sbjct: 21 DYDHHNHDHHGHDHHSHDSSSNSSSEAA-RLQFIQEHGHS 59
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = -2
Query: 548 NFDHDKHIFTGHGGKQRTKKEASEH--TNHFDPSGHSRKIVTKLMNAEHNKKTSN 390
N + D + H K ++ S H +HFDPS + +K+V+ + + N+K S+
Sbjct: 18 NEEDDDYYSNAHSEKS---EDHSNHIKVSHFDPSSYKQKLVS-VRETQRNRKFSS 68
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 255 WNIQGVFYSHKISTSPTHRGCDLERDNATNEPSSKSV 145
+N++GVF + + GC ERD AT + K +
Sbjct: 56 YNVEGVFMRNWLDEDSAPSGCPAERDWATVQKVCKKL 92
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = +1
Query: 91 LTSPLFEIRHWNGVTSKIYRLTAWLICGVVP 183
L P F + HW + Y WL C +P
Sbjct: 251 LEMPFFALSHWYAFRIEDYDTPTWLSCARLP 281
>SPAC23H3.05c |swd1||COMPASS complex subunit
Swd1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 398
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -1
Query: 648 STRRFRCDFCIRFKISNATRKYVRSI 571
S ++ R FC RF I N+T + +R++
Sbjct: 209 SIKQIRLSFCKRFLIFNSTDRVIRTV 234
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +2
Query: 473 CVQTLLSWCAA-YHRGP*KC-ACRGRNCSSRIRQRMLLTYLRVAFDILK 613
C T S+C Y R C ACR SR+R+ +L + +F +++
Sbjct: 44 CSHTFCSFCIRDYLREHPMCPACRAPEQESRLRKNTILEEILESFKVIR 92
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 281 GWMLVSEID-GTSKAFFTHT 225
GW ++D GTSK FTHT
Sbjct: 283 GWAHTRDLDAGTSKTSFTHT 302
>SPBC16G5.19 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 105
Score = 25.4 bits (53), Expect = 7.2
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = -1
Query: 303 CGYPRSVRVDARLRDRWNIQGVFYSHKISTSPTHRGCDLERDNATNEPSSKSVYFGRN 130
C +++V+ R W IQ + Y HR DL R+ SK++Y GR+
Sbjct: 10 CAMISTLKVNKIERGYWFIQCLRYCFIYIIKKQHRQADLPRNFGMR---SKALYIGRS 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,908
Number of Sequences: 5004
Number of extensions: 50818
Number of successful extensions: 285
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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