Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C03
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   2.3  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   3.9  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    25   5.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   5.2  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   5.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.2  
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    24   6.9  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    24   9.1  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    24   9.1  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -1

Query: 170 TFYPRCHPPLASPXQ---GILAYDKTHTTASANITXRWNR 60
           T YP  HP L +P      IL+   +    ++NI+  W +
Sbjct: 10  TIYPGAHPGLLTPDHQHAAILSVQNSPALENSNISEHWKQ 49


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = -1

Query: 266 YSSVPISIDLWSTITTLSTTPNYSAKGLRTFITFYP 159
           Y+   ++  +WS  +   +TP  SA     F T YP
Sbjct: 116 YTMDNVTAPVWSNTSVPVSTPETSATSSSEFFTSYP 151


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -1

Query: 248 SIDLWSTITTLSTTPNYSAKGLRTFITFYPRCHPPLASPXQGILAY 111
           S+D+ ++ T  ST P  +++   +F T  P     L+SP     +Y
Sbjct: 233 SVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTLSSPASSSSSY 278


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = -3

Query: 228 HHNAKYDAKLFRKRVENLHYVLPQVPSTIGKS 133
           +HNA     +FR   + + Y+ P+  + +G++
Sbjct: 349 YHNAIVRVNIFRDHRQTIQYISPEDSNVLGQA 380


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 257 VPISIDLWSTITTLSTTPN 201
           +P+SIDLW  +  L T  N
Sbjct: 400 IPMSIDLWLALARLETYEN 418


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 295 RCGDRRMRSPIRRYQYQ*TYGLPSQR 218
           +C  RR  S    Y Y+ TYG P +R
Sbjct: 25  KCDQRRPCSNCIAYNYECTYGQPFKR 50


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 278 NAVTYSSVPISIDLWSTITTLSTTPNYSAKGLRT 177
           ++V+  SVP S  LW T ++L   P Y+   + T
Sbjct: 365 HSVSSISVPKSSSLWLTKSSLINPPYYAKINVET 398


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 252 NINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIXGNSG 115
           +I+  + YHHN K +++  R +  +  YVL       G  +   SG
Sbjct: 200 SISHQLNYHHNVKLNSQALRNK--SADYVLKHCEQFEGFLLDEESG 243


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = -3

Query: 270  HLFVGTNINRPMVYHHNAKYDAKLFRKRVENLHY 169
            H+ +   ++  +  ++ AK    + R +V+NLHY
Sbjct: 939  HVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLHY 972


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,773
Number of Sequences: 5004
Number of extensions: 29452
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)