Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C03
         (377 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0292 + 2193309-2193338,2193565-2193640,2193744-2195203,219...    28   2.1  
03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394     27   3.7  
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447     27   3.7  
06_03_0859 - 25473784-25473798,25473862-25473923,25474251-254743...    27   6.5  
09_04_0359 + 16941904-16942110,16943636-16943785,16944084-169442...    26   8.6  
01_06_1620 + 38697960-38698131,38698532-38700732                       26   8.6  

>12_01_0292 +
           2193309-2193338,2193565-2193640,2193744-2195203,
           2195479-2195505,2195794-2196024,2196523-2196692,
           2197278-2197421,2198036-2198083,2198503-2198566
          Length = 749

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 275 AVTYSSVPISIDLWS-TITTLSTTPNYSAKGLRTFI 171
           + T S+ P     WS ++TT+ +TPNY  K    F+
Sbjct: 635 STTASACPDHRTAWSLSLTTIDSTPNYRGKSCVVFV 670


>03_05_0598 + 26006027-26006746,26007992-26008094,26008847-26012394
          Length = 1456

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = -3

Query: 258 GTNINRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTIGKSIXGNSGL**DSHHRFR*H 79
           GT+ N+ ++       D     KR+ ++HY+   +PS     +    G+  D +H F   
Sbjct: 242 GTDWNQEILKRIGGHRDKPSSTKRIRDIHYLTGSLPSAFCMLLVQMGGM--DKNHPFGIG 299

Query: 78  HXKVESGSLSSISV 37
             +  +GS +S +V
Sbjct: 300 QMENGNGSYASEAV 313


>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
          Length = 309

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 225 HNAKYDAKLFRKRVENLHYVL 163
           HNAK+  +++RK  E  HY+L
Sbjct: 281 HNAKFPTEIYRKGQEYKHYML 301


>06_03_0859 -
           25473784-25473798,25473862-25473923,25474251-25474345,
           25475718-25475831,25476490-25476695,25476834-25476959,
           25479516-25480178
          Length = 426

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 343 QSHFDNETANHYISPRRCGDR 281
           Q+H +  TAN YIS R  G R
Sbjct: 259 QTHSETRTANFYISDRNTGKR 279


>09_04_0359 +
           16941904-16942110,16943636-16943785,16944084-16944293,
           16944376-16944452,16944554-16944698
          Length = 262

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 206 PNYSAKGLRTFITFYPRCHPPLASPXQGIL 117
           P  + K +     F   C P +ASP QG+L
Sbjct: 64  PTVTVKTVEAATKFLSFCDPEMASPCQGLL 93


>01_06_1620 + 38697960-38698131,38698532-38700732
          Length = 790

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 307 YNDLQFHCRNDSERLSI 357
           YN+LQF  RN SERL +
Sbjct: 488 YNELQFLTRNFSERLGV 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,873
Number of Sequences: 37544
Number of extensions: 194581
Number of successful extensions: 398
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)