Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C03
         (377 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80453-4|AAK31441.2|  674|Caenorhabditis elegans Trehalase prote...    27   3.4  
AJ512339-1|CAD54512.1|  674|Caenorhabditis elegans trehalase pro...    27   3.4  
U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical pr...    27   4.5  
AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine re...    27   5.9  
Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical p...    26   7.8  
Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>U80453-4|AAK31441.2|  674|Caenorhabditis elegans Trehalase protein
           5 protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 263 SSVPISIDLWSTITTLSTTPNYSAKGLRTFITFY 162
           SS  + ID+ +TITT S++  +    + T IT +
Sbjct: 636 SSTSLPIDITTTITTSSSSSTFGYSNILTLITVF 669


>AJ512339-1|CAD54512.1|  674|Caenorhabditis elegans trehalase
           protein.
          Length = 674

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 263 SSVPISIDLWSTITTLSTTPNYSAKGLRTFITFY 162
           SS  + ID+ +TITT S++  +    + T IT +
Sbjct: 636 SSTSLPIDITTTITTSSSSSTFGYSNILTLITVF 669


>U40419-1|AAA81422.1|  283|Caenorhabditis elegans Hypothetical
           protein C27F2.4 protein.
          Length = 283

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = -3

Query: 279 ECGHLFVGTNINRPMV 232
           + GH+FVG +++RPM+
Sbjct: 73  DAGHMFVGVDVSRPML 88


>AC006677-4|AAF39949.1|  327|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 58 protein.
          Length = 327

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 275 AVTYSSVPISIDLWSTITTLSTTPNY 198
           AVTY S+   I LWS I+ L+   N+
Sbjct: 240 AVTYGSIYTGILLWSIISALNANFNF 265


>Z22179-17|CAA80171.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 246 NRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTI 142
           N+  +   +A ++ +LF++ + NL+ V PQ+P  I
Sbjct: 130 NQNTINMMSAAFNQQLFKQTLANLNTVTPQLPVNI 164


>Z22173-3|CAA80127.2|  691|Caenorhabditis elegans Hypothetical
           protein F58A4.11 protein.
          Length = 691

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -3

Query: 246 NRPMVYHHNAKYDAKLFRKRVENLHYVLPQVPSTI 142
           N+  +   +A ++ +LF++ + NL+ V PQ+P  I
Sbjct: 130 NQNTINMMSAAFNQQLFKQTLANLNTVTPQLPVNI 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,312,417
Number of Sequences: 27780
Number of extensions: 162375
Number of successful extensions: 385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 385
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)