Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_C02
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55923| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.85 
SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_26145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_55923| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 45  KSTMFIVKTNLTKYILTYSKLHNTYCKKVIRFSNLLNK*SQCSKYLHQIN 194
           K+T  +  +N T   + Y   +NT   + IR+ +  N  SQ S Y+H  N
Sbjct: 39  KATRIVYTSNTTSQAICYVHTYNT-TSQAIRYVHTYNTTSQASLYVHTYN 87


>SB_33499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 486

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 566 HMRCYKVTYAIFVKTEPSMRKYILVENTF 652
           H   +K+TY +FV T  S R ++ + N+F
Sbjct: 102 HNSFFKITYHMFVYTTRSSRSHVRLHNSF 130


>SB_26145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 45  KSTMFIVKTNLTKYILTYSKLHNTYCKKVIRFSNLLNK*SQCSKYLHQIN 194
           ++T ++   N T     Y   +NT   + IR+ +  N  SQ ++Y+H  N
Sbjct: 92  QATRYVHTYNTTSQATRYVHTYNT-TSQAIRYVHTYNTTSQATRYVHTYN 140


>SB_49460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +3

Query: 45  KSTMFIVKTNLTKYILTYSKLHNTYCKKVIRFSNLLNK*SQCSKYLHQIN 194
           ++T ++   N T     Y   +NT   +  R+ +  N  SQ + Y+H  N
Sbjct: 78  QATRYVHTYNTTSQATRYVHTYNTSTSQATRYVHTYNTTSQATLYVHTYN 127


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,235,463
Number of Sequences: 59808
Number of extensions: 317332
Number of successful extensions: 478
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)