Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B24
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase...    29   0.81 
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    29   0.81 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   4.3  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.7  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   5.7  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   5.7  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    25   10.0 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    25   10.0 

>SPAC10F6.17c ||SPAC56E4.01c|mitochondrial pyruvate dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 444

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 21/70 (30%), Positives = 30/70 (42%)
 Frame = +2

Query: 593 IASDVPKEIVLSVPEIREFPANEDLVQARHHQLEQFRRTVLAPKRDVVNFDYFKQKQCXD 772
           IA D+P      V + R  P + D +  R   L++F RTV   K  +  +D F Q    D
Sbjct: 40  IALDIPNSTYQHVSKNRVPPTDGDGITKR---LKEFERTVTVNKDGIFRYD-FNQVASND 95

Query: 773 EVTGDRVHAL 802
               D V  +
Sbjct: 96  PCEDDHVEVI 105


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +2

Query: 2   GYKFIKINASDNR*IHCINKK 64
           GYK ++INASD+R  H +++K
Sbjct: 441 GYKVLEINASDDRTAHTVHEK 461


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 373 GGRAHSPPGVKWLLEPIDIYN 311
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 475 PYIPLAPNSLRDSPLPEDSHPAAAGSRLRASTSPRNCSV 591
           P  P+A ++L     P D+ P+A+ S    +T  RN S+
Sbjct: 114 PLEPIASSALGTVEPPTDNKPSASTSTAVPTTEARNTSI 152


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 754  FEIVKVDDITFWSKXSPSKLFKLMVSRLHEVLV 656
            FE  KV+D+  W++ S S++ K   + L+++ V
Sbjct: 1233 FEREKVEDVAHWAQSSLSEMAKCFHAELYKLWV 1265


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 330  SSNHLTP-GGL*ARPPIYAIKIK*KRNISLIVSRLLLKHDHSQSRERIFSLYS 485
            S  HLTP   +  R PIY   +     + L  S  L+++ HSQ+ E+IF + S
Sbjct: 1211 SKYHLTPIPKIDIRYPIYKENVTIHTWMQLF-SLKLMEYAHSQNAEKIFGICS 1262


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 502 LRDSPLPEDSHPAAAGSRLRASTSP 576
           LRDS +P +SHP +  S     T P
Sbjct: 176 LRDSTIPANSHPQSLPSNSIPKTEP 200


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 82  KKIKHIENQNSHAANNIL*QFPAWWQDL 165
           K I H +N + H  N +    P+W + L
Sbjct: 580 KSISHSKNTDKHVGNELPQDIPSWLRSL 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,042
Number of Sequences: 5004
Number of extensions: 55513
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)