Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B24
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0840 + 32343700-32344138,32345329-32345419,32345584-323458...    31   1.5  
04_03_0742 + 19200045-19200053,19200158-19200437,19201331-192015...    28   7.9  

>01_06_0840 + 32343700-32344138,32345329-32345419,32345584-32345866,
            32346023-32346097,32346470-32346514,32346889-32346979,
            32347060-32347118,32347621-32347704,32348109-32348168,
            32348585-32348637,32348724-32348757,32349334-32350335,
            32350477-32351035,32351873-32352372,32352793-32353200
          Length = 1260

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = -3

Query: 285  VSSKVSRIVXKGCPALQAETRYCFTAEIGGAVIPTRADSQEVLPPGRKLSQYIVCCV 115
            VS  + R +     AL     YC    +  A++      Q+VLPP    + Y + C+
Sbjct: 1091 VSVVIDRWLRFDATALDVAQIYCLRERLASAILFKVKHPQDVLPPDLGATMYAIACI 1147


>04_03_0742 +
           19200045-19200053,19200158-19200437,19201331-19201545,
           19201705-19201792,19202277-19202842
          Length = 385

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 475 PYIPLAPNSLRDSPLPEDSHPAAAGSRLRASTSPRNCSV 591
           PY P  P   + S  P  SHP+   S++ +  +P  CSV
Sbjct: 346 PYPPSYPPPYQPSYPPYPSHPSHHPSQIFSDENPNACSV 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,151,872
Number of Sequences: 37544
Number of extensions: 374974
Number of successful extensions: 886
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)