Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B24
         (830 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    27   0.28 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 0.28
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 238 SSRNALLLHGRNRRGGNTYPCGLTRGPATRQEIVTIYCLLRDYFDFQYVL 89
           +  NA+LL GR+++     P G T     R   + I  + R +F F + +
Sbjct: 366 TKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFLFAV 415


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 672 RRDTINLNSFEGLXLLQNVMSSTLTISNRN 761
           R + I L    G+ +L N+M +++   N+N
Sbjct: 330 RGERIQLTEKNGIDVLGNIMEASILSPNQN 359



 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 732 SSTLTISNRNNVXMK 776
           S T+ I+NRNN  MK
Sbjct: 484 SYTIVINNRNNTSMK 498


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,614
Number of Sequences: 438
Number of extensions: 3790
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)