Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_B13
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 155 9e-39
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 101 1e-22
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 55 1e-08
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 35 0.011
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 27 2.2
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 6.9
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 25 9.1
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.1
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 155 bits (375), Expect = 9e-39
Identities = 71/84 (84%), Positives = 76/84 (90%)
Frame = -3
Query: 770 DRXRIGEAREELMRMLSEDEXRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYI 591
DR RI EA EEL RML+EDE RDA+LL+FANKQDLPNAMNAAEITDKLGLHSLR+R WYI
Sbjct: 96 DRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYI 155
Query: 590 QATCATSGDGLYEGLDWLSNQLKN 519
QATCATSGDGLYEGL+WLS LKN
Sbjct: 156 QATCATSGDGLYEGLEWLSTNLKN 179
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 101 bits (242), Expect = 1e-22
Identities = 47/83 (56%), Positives = 60/83 (72%)
Frame = -3
Query: 770 DRXRIGEAREELMRMLSEDEXRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYI 591
D RI EAR+EL R++S+ E RD +LL+ ANKQDLP A++ A+ITD L L L++R W +
Sbjct: 100 DSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNV 159
Query: 590 QATCATSGDGLYEGLDWLSNQLK 522
Q TCA +GDGL EGL WLS K
Sbjct: 160 QPTCALTGDGLLEGLAWLSQNAK 182
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 54.8 bits (126), Expect = 1e-08
Identities = 25/83 (30%), Positives = 46/83 (55%)
Frame = -3
Query: 770 DRXRIGEAREELMRMLSEDEXRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYI 591
D R+ E R L +L E++ +L+ ANK D+ A+++ EI+ L + ++ +W I
Sbjct: 95 DDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSHWRI 154
Query: 590 QATCATSGDGLYEGLDWLSNQLK 522
+ A +G + + + WL+N LK
Sbjct: 155 FSVSALTGLNIKDAISWLANDLK 177
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 35.1 bits (77), Expect = 0.011
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = -3
Query: 770 DRXRIGEAREELMRMLSEDEXRDAVLLIFANKQDLPNAMNAAEITDKLGLH 618
D R+ E++ EL +L+ +E LI NK D P A++ E+ LGL+
Sbjct: 99 DFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAISEDELKAALGLY 149
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 314 LKYCFSKYYINYVYLNAINGMQINSVQ 234
L YC Y+INY+ ++IN ++ +Q
Sbjct: 33 LSYCCVSYFINYLDRSSINNAYLSGMQ 59
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 550 PSYSPSPEVAHVAWMYQLRLRSECRPSL-SVISAAFIAFGRSCLFA 684
P+ SP PEV+H W+ L P L S + IAF CL A
Sbjct: 16 PNSSPDPEVSHKLWVSSLNKFQYTLPLLISNFAGLGIAF-IYCLIA 60
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 25.4 bits (53), Expect = 9.1
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = +1
Query: 1 LLLHFSRVSSIPLHITM--CAHTGXMLHLFLP--PLSDK---IKKKNKIVGNSPTLHTIF 159
L LH +RVSS P IT+ T +++ L P D I +K GNS + T+F
Sbjct: 66 LALH-ARVSSHPYIITLHRVLETEDAIYVVLQYCPNGDLFTYITEKKVYQGNSHLIKTVF 124
Query: 160 CSTSSRIEH 186
S +EH
Sbjct: 125 LQLISAVEH 133
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +1
Query: 22 VSSIPLHITMCAHTGXMLHLFLPPLSDKIKKKNKIVGNSPTLHTIFCSTSSRIEHAPHDH 201
V+S PL T C + + + P S + S + T C+TS+ + +
Sbjct: 486 VTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPV 545
Query: 202 IMDPNATKYKHCTELICIPF 261
P AT +CT +P+
Sbjct: 546 TSTPLAT--TNCTTSTSVPY 563
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,108,669
Number of Sequences: 5004
Number of extensions: 64184
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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