Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B12
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   201   7e-53
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   200   2e-52
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.2  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.7  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.1  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    26   6.1  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  201 bits (491), Expect = 7e-53
 Identities = 96/141 (68%), Positives = 110/141 (78%)
 Frame = -1

Query: 715 VXSSRPFGQRAVLKFAAHTGXTPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 536
           V SSRP+G RAVLKFAAHTG T IAGRFTPG FTN I   +REPRL+IV DP  D Q I 
Sbjct: 79  VISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIK 138

Query: 535 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 356
           EAS+VNIPVIALC+TDS L  VD+AIP N K   SIGL W+LLAREVLRLRG + R   W
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAW 198

Query: 355 DVVVDLFFYRDPEESEKDEQQ 293
           +V+ DL+FYRDPEE E++E+Q
Sbjct: 199 EVMPDLYFYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  200 bits (487), Expect = 2e-52
 Identities = 95/143 (66%), Positives = 110/143 (76%)
 Frame = -1

Query: 715 VXSSRPFGQRAVLKFAAHTGXTPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPIT 536
           V S+R +G RAVLKFAAHTG T IAGRFTPG FTN I   +REPRL++V DP  D Q I 
Sbjct: 78  VVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIK 137

Query: 535 EASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRW 356
           EAS+VNIPVIALC+TDS L  VDIAIP N K   SIGL+W+LLAREVLR+RG L R   W
Sbjct: 138 EASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPW 197

Query: 355 DVVVDLFFYRDPEESEKDEQQAK 287
           DV+ DL+FYRDPEE E++E+  K
Sbjct: 198 DVMPDLYFYRDPEEVEREEEAKK 220


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -1

Query: 586 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 407
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 406 AR 401
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 538 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 428
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 430 IGLMWWLLAREVLRLRGVLPRDQRWD 353
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -2

Query: 375 FPVTSAGML--WLICSSTVTLKKVKRM 301
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 185 PTCCTRCSSCFWSTP 141
           PTCC   SSC +S P
Sbjct: 41  PTCCVVGSSCIYSNP 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,739,114
Number of Sequences: 5004
Number of extensions: 53561
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)