Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_B11
(811 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0306 + 24280773-24280776,24280906-24280929,24281023-242811... 299 2e-81
06_03_1052 - 27217792-27217846,27218025-27218114,27218191-272182... 297 7e-81
08_01_0179 + 1519141-1519144,1519278-1519301,1519417-1519517,151... 294 5e-80
02_01_0533 + 3868230-3868564,3869040-3869098,3869187-3869225,386... 294 6e-80
02_04_0507 + 23546911-23546953,23547011-23547111,23547695-235478... 293 8e-80
04_04_0120 + 22911863-22911904,22912002-22912112,22912212-229127... 182 2e-46
03_01_0208 + 1642041-1642118,1642200-1642310,1643157-1643318,164... 171 7e-43
07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207 28 7.6
06_03_1221 - 28514952-28518152 28 7.6
05_02_0101 + 6611694-6611834,6612651-6612734,6613035-6613096,661... 28 7.6
03_03_0278 - 16126803-16129049 28 7.6
>04_04_0306 +
24280773-24280776,24280906-24280929,24281023-24281123,
24281359-24281502,24281667-24281782,24281869-24281968,
24282068-24282214,24282329-24282389,24282480-24282577,
24283118-24283260,24283374-24283457,24283538-24283627,
24284018-24284063
Length = 385
Score = 299 bits (733), Expect = 2e-81
Identities = 144/204 (70%), Positives = 165/204 (80%)
Frame = -1
Query: 811 APMFVVGVNLEAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 632
APMFVVGVN + Y P ++SNASCTTNCLAPLAKVI+D F IVEGLM
Sbjct: 178 APMFVVGVNEKEYKPDIDIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKT 237
Query: 631 VDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 452
VDGPS K WR GR A NIIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTV
Sbjct: 238 VDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTV 297
Query: 451 RLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNF 272
RL KPASY+ IK +KE +EG LKGILGY E+ +VS+DF GD+ SSIFDA AGI+LNDNF
Sbjct: 298 RLEKPASYDQIKAAIKEESEGKLKGILGYVEEDLVSTDFQGDNRSSIFDAKAGIALNDNF 357
Query: 271 VKLISWYDNEYGYSSRVIDLIKYI 200
VKL+SWYDNE+GYSSRV+DLI+++
Sbjct: 358 VKLVSWYDNEWGYSSRVVDLIRHM 381
>06_03_1052 -
27217792-27217846,27218025-27218114,27218191-27218274,
27218526-27218668,27218748-27218845,27218959-27219019,
27219184-27219330,27219428-27219527,27219701-27219813,
27220302-27220402,27220614-27220652,27220739-27220797,
27221027-27221088,27221411-27221506
Length = 415
Score = 297 bits (729), Expect = 7e-81
Identities = 142/204 (69%), Positives = 166/204 (81%)
Frame = -1
Query: 811 APMFVVGVNLEAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 632
APMFVVGVN + Y+PS V+SNASCTTNCLAPLAK++H+ F I EGLM
Sbjct: 205 APMFVVGVNEKNYNPSMNVVSNASCTTNCLAPLAKIVHEEFGIAEGLMTTVHATTATQKT 264
Query: 631 VDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 452
VDGPS K WR GRGA QNIIP+STGAAKAVGKV+PALNGKLTGMAFRVP NVSVVDLT
Sbjct: 265 VDGPSMKDWRGGRGASQNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPNVSVVDLTC 324
Query: 451 RLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNF 272
RL K ASYE +K +KEA+EG LKGILGYT++ VVS+DFIGD+ SSIFDA AGI L+ +F
Sbjct: 325 RLEKSASYEDVKAAIKEASEGSLKGILGYTDEDVVSNDFIGDTRSSIFDAKAGIGLSSSF 384
Query: 271 VKLISWYDNEYGYSSRVIDLIKYI 200
+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 385 MKLVSWYDNEWGYSNRVLDLIGHM 408
>08_01_0179 +
1519141-1519144,1519278-1519301,1519417-1519517,
1519805-1519920,1519944-1520112,1520713-1520859,
1520943-1521003,1521086-1521183,1521608-1521750,
1521980-1522063,1522191-1522280,1522375-1522420
Length = 360
Score = 294 bits (722), Expect = 5e-80
Identities = 139/204 (68%), Positives = 164/204 (80%)
Frame = -1
Query: 811 APMFVVGVNLEAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 632
APMFV GVN + Y ++SNASCTTNCLAPLAKVIHDNF I+EGLM
Sbjct: 153 APMFVCGVNEDKYTSDIDIVSNASCTTNCLAPLAKVIHDNFGIIEGLMTTVHAITATQKT 212
Query: 631 VDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 452
VDGPS K WR GR A NIIP+STGAAKAVGKV+P LNGKLTGM+FRVP +VSVVDLTV
Sbjct: 213 VDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPDLNGKLTGMSFRVPTVDVSVVDLTV 272
Query: 451 RLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNF 272
R+ K ASY+AIK +K A+EG LKGI+GY E+ +VS+DF+GDS SSIFDA AGI+LNDNF
Sbjct: 273 RIEKAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNF 332
Query: 271 VKLISWYDNEYGYSSRVIDLIKYI 200
VKL++WYDNE+GYS+RVIDLI+++
Sbjct: 333 VKLVAWYDNEWGYSNRVIDLIRHM 356
>02_01_0533 +
3868230-3868564,3869040-3869098,3869187-3869225,
3869629-3869729,3870288-3870400,3870976-3871075,
3871170-3871316,3871442-3871502,3871616-3871713,
3871786-3871928,3872221-3872304,3872389-3872478,
3872574-3872628
Length = 474
Score = 294 bits (721), Expect = 6e-80
Identities = 139/204 (68%), Positives = 165/204 (80%)
Frame = -1
Query: 811 APMFVVGVNLEAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 632
APMFVVGVN ++YDP V+SNASCTTNCLAPLAKV+H+ F IVEGLM
Sbjct: 264 APMFVVGVNEKSYDPKMNVVSNASCTTNCLAPLAKVVHEEFGIVEGLMTTVHATTATQKT 323
Query: 631 VDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 452
VDGPS K WR GRGA QNIIP+STGAAKAVGKV+P LNGKLTGMAFRVP NVSVVDLT
Sbjct: 324 VDGPSMKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTC 383
Query: 451 RLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNF 272
R+ K ASY+ +K +K A+EG LKGILGYT++ VVS+DF+GD+ SSIFDA AGI L+ +F
Sbjct: 384 RIEKSASYDDVKAAIKAASEGALKGILGYTDEDVVSNDFVGDARSSIFDAKAGIGLSSSF 443
Query: 271 VKLISWYDNEYGYSSRVIDLIKYI 200
+KL+SWYDNE+GYS+RV+DLI ++
Sbjct: 444 MKLVSWYDNEWGYSNRVLDLIAHM 467
>02_04_0507 +
23546911-23546953,23547011-23547111,23547695-23547810,
23547897-23547996,23548027-23548215,23548303-23548363,
23548469-23548566,23548943-23549085,23549228-23549311,
23549423-23549512,23549599-23549644
Length = 356
Score = 293 bits (720), Expect = 8e-80
Identities = 144/206 (69%), Positives = 164/206 (79%)
Frame = -1
Query: 811 APMFVVGVNLEAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 632
APMFVVGVN + Y ++SNASCTTNCLAPLAKVI+D F IVEGLM
Sbjct: 149 APMFVVGVNEKEYKSDVNIVSNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKT 208
Query: 631 VDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 452
VDGPS K WR GR A NIIP+STGAAKAVGKV+PALNGKLTGMAFRVP +VSVVDLTV
Sbjct: 209 VDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTV 268
Query: 451 RLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNF 272
RL KPASY+ IK +KE AEG LKGILGY E+ +VS+DF GDS SSIFDA AGI+L+D F
Sbjct: 269 RLEKPASYDQIKAAIKEEAEGKLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALSDTF 328
Query: 271 VKLISWYDNEYGYSSRVIDLIKYIQS 194
VKL+SWYDNE+GYS+RVIDLI+++ S
Sbjct: 329 VKLVSWYDNEWGYSTRVIDLIRHMHS 354
>04_04_0120 +
22911863-22911904,22912002-22912112,22912212-22912764,
22912852-22913354
Length = 402
Score = 182 bits (444), Expect = 2e-46
Identities = 93/206 (45%), Positives = 123/206 (59%)
Frame = -1
Query: 808 PMFVVGVNLEAYDPSXKVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXXV 629
P +VVGVN + Y P +ISNASCTTNCLAP K++ F I++G M +
Sbjct: 196 PTYVVGVNADQYSPDEPIISNASCTTNCLAPFVKILDQKFGIIKGTMTTTHSYTGDQRLL 255
Query: 628 DGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVR 449
D L R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL V+
Sbjct: 256 DASHRDL-RRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQ 314
Query: 448 LGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDNFV 269
+ K E + Q +++A LKGIL + +VS DF S DA+ + + D+ V
Sbjct: 315 VSKKTLAEEVNQAFRDSAANELKGILEVCDVPLVSVDFRCSDVSCTIDASLSMVMGDDMV 374
Query: 268 KLISWYDNEYGYSSRVIDLIKYIQSK 191
K+I+WYDNE+GYS RV+DL + ++
Sbjct: 375 KVIAWYDNEWGYSQRVVDLADIVANQ 400
>03_01_0208 +
1642041-1642118,1642200-1642310,1643157-1643318,
1643433-1643600,1643683-1643843,1643930-1643991,
1644078-1644127,1644247-1644653,1644760-1644895
Length = 444
Score = 171 bits (415), Expect = 7e-43
Identities = 93/208 (44%), Positives = 122/208 (58%), Gaps = 2/208 (0%)
Frame = -1
Query: 808 PMFVVGVNLEAYDPSX-KVISNASCTTNCLAPLAKVIHDNFEIVEGLMXXXXXXXXXXXX 632
P +V+GVN Y +ISNASCTTNCLAP K++ + F IV+G M
Sbjct: 207 PTYVLGVNEGDYSHEVANIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRL 266
Query: 631 VDGPSGKLWRDGRGAQQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTV 452
+D L R R A NI+P STGAAKAV V+P L GKL G+A RVP NVSVVDL +
Sbjct: 267 LDASHRDL-RRARAAALNIVPTSTGAAKAVALVLPQLKGKLNGIALRVPTPNVSVVDLVI 325
Query: 451 RLGKPA-SYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAGISLNDN 275
K + + + ++AA GPL GIL + +VS DF SS DA+ + + D+
Sbjct: 326 NTVKTGITADDVNAAFRKAAAGPLSGILDVCDVPLVSVDFRCSDVSSTIDASLTMVMGDD 385
Query: 274 FVKLISWYDNEYGYSSRVIDLIKYIQSK 191
VK+++WYDNE+GYS RV+DL + SK
Sbjct: 386 MVKVVAWYDNEWGYSQRVVDLAHLVASK 413
>07_01_0642 - 4795536-4795628,4795941-4796063,4796962-4797207
Length = 153
Score = 28.3 bits (60), Expect = 7.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 240 YSLSYQLISFTKLSFKEIPAAASKIEECESPMK 338
YSL + + TK FK+ K EEC +P K
Sbjct: 77 YSLVMKCLENTKNDFKKCKTLIDKYEECSNPPK 109
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 28.3 bits (60), Expect = 7.6
Identities = 34/119 (28%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Frame = -1
Query: 628 DGPSGKLWRDGRGAQQNIIP--ASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLT 455
DG +LW GRG I P A+ A + +L+G+ + F +P N +VVD++
Sbjct: 72 DGAVTRLWLPGRGLGGTISPSIANLTALTYLNLSGNSLSGRFPDLLFALP--NATVVDVS 129
Query: 454 VRLGKPASYEAIKQKVKEAAEGPLKGILGYTEDQVVSSDFIGDSHSSIFDAAAG-ISLN 281
S E V AA +G L V S+ G S+I++ +SLN
Sbjct: 130 Y---NRLSGELPNAPVAAAAATNARGSLSLQVLDVSSNLLAGRFPSAIWEHTPRLVSLN 185
>05_02_0101 +
6611694-6611834,6612651-6612734,6613035-6613096,
6613304-6613322
Length = 101
Score = 28.3 bits (60), Expect = 7.6
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = -1
Query: 586 QQNIIPASTGAAKAVGKVIPALNGKLTGMAFRVPVANVSVVDLTVRLGKPASYEAIKQKV 407
QQ A+TG K V P +NG +GM + + +V + ++LG+ ++ + K +
Sbjct: 9 QQQTAAAATGVWKTVK---PFVNGGASGMLATCVIQPIDMVKVKIQLGEGSAAQVTKNML 65
Query: 406 KEAAEGPL-KGI 374
G KG+
Sbjct: 66 ANEGIGSFYKGL 77
>03_03_0278 - 16126803-16129049
Length = 748
Score = 28.3 bits (60), Expect = 7.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -3
Query: 755 HLKCFLHHKLSCPTCK 708
+LK +L+H L CPTC+
Sbjct: 220 YLKVYLNHNLLCPTCR 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,725,967
Number of Sequences: 37544
Number of extensions: 362064
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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