Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B10
         (840 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   2.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.1  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   8.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 738 CLISWQQLSEPFQNVRV 788
           CLISW  L +P Q +++
Sbjct: 429 CLISWNPLMQPKQPIKL 445


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -3

Query: 742 RHEA-YVCHLENRSSMATHNQERTRSANGWW 653
           RH   YVC  EN +  A+H+   T +    W
Sbjct: 651 RHAGEYVCTAENAAGTASHSTTLTVNVPPRW 681


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 312 IHTTNYIFKLNINITNI 362
           IH  NY  KL  NI NI
Sbjct: 323 IHNNNYNKKLYYNIINI 339


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,693
Number of Sequences: 438
Number of extensions: 4251
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)