Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B05
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   2.2  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   2.8  
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    26   3.8  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   5.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   6.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    25   8.7  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.7  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 86  VGSGARVNVFAASSGRVSKTV 148
           V SGARV ++ ASS  V KT+
Sbjct: 57  VTSGARVQIYGASSRSVKKTI 77


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 505 KIDLAPTVESDAAAVPEI-KTPEAADAPKLADNPVDEDKPAD 383
           K  +   V SDA  V +  KT E AD     +  +DE KPAD
Sbjct: 290 KSKIRDIVNSDANVVEQSEKTTEDADEEPETEENLDEFKPAD 331


>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 592 AEISKEEKPSATDAEGSADSAAIIPNMVKKI--DLAPTVESDAAAVPEIKTPEA 437
           A   K+ +PS  +   +A   +  PN VK +  D+ P   +      +I  PEA
Sbjct: 556 ASALKDREPSEKELPSTAKETSFAPNAVKTLDEDITPQSSNWQTVAKQIIFPEA 609


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 23/64 (35%), Positives = 31/64 (48%)
 Frame = -1

Query: 592 AEISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLAD 413
           +E+SK  KP+ TD            N  K+I++A    S  A  P+  TP AA AP  A 
Sbjct: 44  SEVSKPFKPAVTDPS----------NAKKEINMAIESPSKKATSPKKATP-AAVAPVEAT 92

Query: 412 NPVD 401
           + VD
Sbjct: 93  SAVD 96


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 240 PQKVRNHLTNPNLKKTNLR*TAEALS 163
           PQK+ NHL N  +K +N+    E +S
Sbjct: 538 PQKLSNHLYNLCVKSSNVNYARECIS 563


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 48  GSFTHICYS*SLALAAEHELM 110
           GS   +CYS S++  A+H+L+
Sbjct: 57  GSLNAVCYSCSISCHADHDLV 77


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 457 EIKTPEAADAPKLADNPVDED 395
           E+KTP+A D    A N +DE+
Sbjct: 534 EVKTPDAVDVAHKALNTLDEE 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,966
Number of Sequences: 5004
Number of extensions: 23568
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)