Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B05
         (616 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY507107-1|AAS87021.1| 1043|Homo sapiens NMDA receptor subunit 3...    35   0.26 
AC004528-2|AAC12680.1|  901|Homo sapiens R32184_2 protein.             32   1.8  
BC039878-1|AAH39878.1|  825|Homo sapiens chromosome 14 open read...    31   3.2  
M88338-1|AAA36606.1|  391|Homo sapiens serum protein protein.          29   9.9  
CR456524-1|CAG30410.1|  391|Homo sapiens MSE55 protein.                29   9.9  
BC009356-1|AAH09356.1|  384|Homo sapiens CDC42 effector protein ...    29   9.9  
AL022315-2|CAB42833.1|  391|Homo sapiens CDC42 effector protein ...    29   9.9  

>AY507107-1|AAS87021.1| 1043|Homo sapiens NMDA receptor subunit 3B
           protein.
          Length = 1043

 Score = 34.7 bits (76), Expect = 0.26
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +2

Query: 14  LGVENATLTHMG*FHTYMLQLISRVGSGARVNVFAASSGRVSKTVNTRPP 163
           LG+ +A L+ +G  H +  Q + R+  G+R+  +  +S ++ + +NT PP
Sbjct: 840 LGLGSALLSSLG-EHAFFRQALPRIRKGSRLQYWLHTSQKIHRALNTEPP 888


>AC004528-2|AAC12680.1|  901|Homo sapiens R32184_2 protein.
          Length = 901

 Score = 31.9 bits (69), Expect = 1.8
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 14  LGVENATLTHMG*FHTYMLQLISRVGSGARVNVFAASSGRVSKTVNTRPP 163
           LG+ +A L+ +G  H +    + R+  G+R+  +  +S ++ + +NT PP
Sbjct: 840 LGLGSALLSSLG-EHAFFRLALPRIRKGSRLQYWLHTSQKIHRALNTEPP 888


>BC039878-1|AAH39878.1|  825|Homo sapiens chromosome 14 open reading
           frame 155 protein.
          Length = 825

 Score = 31.1 bits (67), Expect = 3.2
 Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -1

Query: 610 EVQATVAE-ISKEEKPSATDAEGSADSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAA 434
           EVQ+  A+ +S EE P         ++ A   +   ++ LA T  S   A  E++ P A 
Sbjct: 558 EVQSPSAKGVSIEEAPLELQPPSGEETTAEEASAAIQL-LAATEASAEEAPAEVQPPPAE 616

Query: 433 DAPKLADNPVDEDKPADI 380
           +AP     P  E+ PA++
Sbjct: 617 EAPAEVQPPPAEEAPAEV 634


>M88338-1|AAA36606.1|  391|Homo sapiens serum protein protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -1

Query: 598 TVAEISKEEKPSATDAEGSADS------AAIIPNMVKKIDLAPTVESDAAAVPEIKTPEA 437
           T++ + + EKP   D +GS  S      +  + +    +DL P++ S+   V  +    A
Sbjct: 162 TISRLPRSEKPHDRDRDGSFPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPA 221

Query: 436 ADAPKLADNP 407
           A+ P  A NP
Sbjct: 222 AETPAPAANP 231


>CR456524-1|CAG30410.1|  391|Homo sapiens MSE55 protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -1

Query: 598 TVAEISKEEKPSATDAEGSADS------AAIIPNMVKKIDLAPTVESDAAAVPEIKTPEA 437
           T++ + + EKP   D +GS  S      +  + +    +DL P++ S+   V  +    A
Sbjct: 162 TISRLPRSEKPHDRDRDGSFPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPA 221

Query: 436 ADAPKLADNP 407
           A+ P  A NP
Sbjct: 222 AETPAPAANP 231


>BC009356-1|AAH09356.1|  384|Homo sapiens CDC42 effector protein
           (Rho GTPase binding) 1 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -1

Query: 598 TVAEISKEEKPSATDAEGSADS------AAIIPNMVKKIDLAPTVESDAAAVPEIKTPEA 437
           T++ + + EKP   D +GS  S      +  + +    +DL P++ S+   V  +    A
Sbjct: 162 TISRLPRSEKPHDRDRDGSFPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPA 221

Query: 436 ADAPKLADNP 407
           A+ P  A NP
Sbjct: 222 AETPAPAANP 231


>AL022315-2|CAB42833.1|  391|Homo sapiens CDC42 effector protein
           (Rho GTPase binding) 1 protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
 Frame = -1

Query: 598 TVAEISKEEKPSATDAEGSADS------AAIIPNMVKKIDLAPTVESDAAAVPEIKTPEA 437
           T++ + + EKP   D +GS  S      +  + +    +DL P++ S+   V  +    A
Sbjct: 162 TISRLPRSEKPHDRDRDGSFPSEPGLRRSDSLLSFRLDLDLGPSLLSELLGVMSLPEAPA 221

Query: 436 ADAPKLADNP 407
           A+ P  A NP
Sbjct: 222 AETPAPAANP 231


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,738,810
Number of Sequences: 237096
Number of extensions: 883818
Number of successful extensions: 2385
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2382
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)