Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_B04
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 40 3e-04
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 28 1.2
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr... 27 2.8
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 26 4.9
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 4.9
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 26 4.9
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 26 6.4
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 26 6.4
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 6.4
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c... 26 6.4
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 26 6.4
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 8.5
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 40.3 bits (90), Expect = 3e-04
Identities = 19/82 (23%), Positives = 41/82 (50%)
Frame = -3
Query: 725 VMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLFRL 546
+ FY + C +C + W ++ ++ ++NVA I+ +++ K++ + P FL F+
Sbjct: 303 IQFYSSECDDCDDVSTAWYAMANRMRGKLNVAHINCAVS-KRACKQYSIQYFPTFLFFKE 361
Query: 545 GKVYRYDLPXNDVKSFVAFAQD 480
Y N+ V+FA++
Sbjct: 362 EAFVEYVGLPNE-GDLVSFAEE 382
Score = 25.4 bits (53), Expect = 8.5
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Frame = -3
Query: 674 WESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLFRL--GKVY-----RYDLPX 516
W+ S +N A L + AK FHV P+ F GK + ++D+
Sbjct: 547 WQKETDKKNSLVNEAEEKNDLEAIEAAKNFHVNGKPSPTRFAWVNGKFWAQWLRKFDIDI 606
Query: 515 NDVKSFVAF---AQD--WYKNSKGEPVAVLASPFDDVV 417
V AQD W + +KG P+++ D++
Sbjct: 607 EATGPRVIVYNAAQDIYWDETAKGTPISIEKDTVFDII 644
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 28.3 bits (60), Expect = 1.2
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -3
Query: 728 VVMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFH-VGKLPAFLLF 552
+V FY C C+RL +E++G K+ NV + + R H V P F
Sbjct: 162 LVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFF 221
>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = -3
Query: 593 KRFHVGKLPAFLLFRLGKVYRYDLPXNDVKSFVAFAQDWYKNSKGEPVAVLASPF-DDVV 417
K +VG L +++F++ + Y+LP + S +A A + ++ + + F + V
Sbjct: 155 KWVYVGSLILYIIFQIPQALAYNLPMMAINSAIAGA--FGSSALANVASSMCDIFTPETV 212
Query: 416 NWCVEMLKWGIAFGLNI 366
+ + + WG G +I
Sbjct: 213 GFGISLFVWGANAGASI 229
>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 288
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 167 LFRPVCKVKKTVQICGFIFFIKEAQVLL*NCLKFF 63
+ + C + + I GFIFF ++ +CL FF
Sbjct: 173 VLKGACYAMRAMYILGFIFFALTIVSIVISCLPFF 207
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +1
Query: 316 NPKPAIPICHIHGCSVSILRPNAI 387
N A+P+C + GC V +L A+
Sbjct: 822 NTDDALPVCPVPGCGVKLLDKRAL 845
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 4.9
Identities = 28/119 (23%), Positives = 52/119 (43%), Gaps = 16/119 (13%)
Frame = -3
Query: 725 VMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHV-GKLPAFLLFR 549
++FY + L+ V++ + + + A +DA G AK+ +V PAF++
Sbjct: 253 IIFYNST-ESRDELYDVFQPLAKKYQDTLRFAFLDAVRYGA-VAKQMNVESDWPAFVIAN 310
Query: 548 LGKVYRYDLPXNDV--KSFVAFAQDWYKNS-----KGEP--------VAVLASPFDDVV 417
L + +Y P ++ K+ F D+ K +P V ++A FDD+V
Sbjct: 311 LKSMLKYPFPTTELTAKAMTKFVGDFVDGKLQPKIKSQPIPESQEDLVVLVADNFDDIV 369
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 330 YSYLPYPWVFCEYIETECYSPFQHFYTPIHHIIKW*GKNCNRFSFRVFIPILSKCN 497
+ + YP+ F ++ YSPF FY I + G F+ RV+ P+ + N
Sbjct: 171 FHFYSYPFFFVDHPPLSSYSPFLWFYFFITIV----GNFIPLFTPRVWYPLFPEDN 222
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 497 VAFAQDWYKNSKGEPVAVLASPFDDVVNWCVEMLKWGIAFGLNIL 363
++F + K PV V+ P V NW E+ KW +N+L
Sbjct: 592 ISFISVLFYRHKCFPVLVIV-PHATVANWERELKKWAPFLQINVL 635
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.8 bits (54), Expect = 6.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 313 TNPKPAIPI-CHIHGCSVSILRPNAIPHFSISTHQFTTSSNGEARTATGSP 462
TNPK + HI+ + S+ + N + + H ++SSN TATG P
Sbjct: 63 TNPKIEVRSETHIYEPNDSLFKENQDFPSNPTAHSPSSSSNDSVITATGVP 113
>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1077
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 444 NCNRFSFRVFIPILSKCNKRFHIIXWQVI-SVHFAKAKQKE 563
+C ++ IPI+SK K + WQ I + F KA +
Sbjct: 621 SCIEMVYKDAIPIMSKVLKNTEALLWQAIEQLGFKKASSSD 661
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 728 VVMFYGAACVECQRLHAVWESVGATLKSRINVARID 621
+V+FY C C++L ++ + + L S + V +D
Sbjct: 52 LVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVD 87
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/77 (20%), Positives = 29/77 (37%)
Frame = +1
Query: 214 KNRFSYLRFLSFFVSFSGFDLPALIIAIKAVKATNPKPAIPICHIHGCSVSILRPNAIPH 393
K F LS + D+ A I + NP +CH+ G S + N +
Sbjct: 329 KENFDLFNILSIILHMGNIDVGADRSGI--ARLLNPDEIDKLCHLLGVSPELFSQNLVRP 386
Query: 394 FSISTHQFTTSSNGEAR 444
+ H++ S+ + +
Sbjct: 387 RIKAGHEWVISARSQTQ 403
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,013,954
Number of Sequences: 5004
Number of extensions: 63234
Number of successful extensions: 187
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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