Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_B04
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 41 0.001
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 31 0.72
08_02_0891 + 22312537-22312720,22313446-22313525,22314484-223146... 31 0.95
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 31 1.3
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 30 1.7
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 30 2.2
12_02_0750 + 22764481-22764771,22764871-22765383,22765470-227656... 29 3.9
05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604 29 3.9
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 29 3.9
12_02_0754 - 22817277-22817657,22817796-22817927,22818026-228182... 29 5.1
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 29 5.1
05_04_0389 - 20845490-20845600,20845697-20846006,20846097-208462... 29 5.1
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 29 5.1
06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413 28 6.7
05_01_0257 + 1967471-1967695,1968571-1969395 28 6.7
03_02_0284 - 7092506-7092927,7093249-7093414,7093996-7094187,709... 28 6.7
02_01_0088 - 627825-628984,629339-629509,629612-630416 28 6.7
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 28 6.7
09_06_0286 + 22040904-22040936,22041342-22041680,22041948-220421... 28 8.9
05_02_0131 - 6919143-6920125,6920334-6920529 28 8.9
05_02_0130 - 6906540-6907522,6908542-6908737 28 8.9
05_02_0128 - 6890918-6891900,6892929-6893124 28 8.9
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/81 (32%), Positives = 35/81 (43%)
Frame = -3
Query: 728 VVMFYGAACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLFR 549
+V F+ C CQ+L +WE LK VA +DA A A+ + + P +F
Sbjct: 51 LVEFFAPWCGHCQQLTPIWEKAAGVLKGVATVAALDAD-AHKELAQEYGIRGFPTIKVFV 109
Query: 548 LGKVYRYDLPXNDVKSFVAFA 486
GK DVK V FA
Sbjct: 110 PGKPPVDYQGARDVKPIVEFA 130
Score = 28.7 bits (61), Expect = 5.1
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -3
Query: 728 VVMFYGAACVECQRLHAVWESVGATLKSRINVARID 621
+V F+ C C++L W+ LK ++ + +D
Sbjct: 187 IVEFFAPWCGHCKKLAPEWKKAAKNLKGQVKLGHVD 222
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 31.5 bits (68), Expect = 0.72
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Frame = -3
Query: 728 VVMFYGAACVECQRLHAVWESVGATLK--------SRINVARIDASLAGVNTAKRFHVGK 573
VV FY C RL WE ++ RI +A++D + ++ +R H+
Sbjct: 173 VVNFYAPWCYWSNRLKPSWEKTAKIMRERYDPEMDGRIILAKVDCT-EEIDLCRRHHIQG 231
Query: 572 LPAFLLFRLGKVYRYDLPXNDVKSF 498
P+ +FR G + + +D +S+
Sbjct: 232 YPSIRIFRKGSDLKENQGHHDHESY 256
>08_02_0891 +
22312537-22312720,22313446-22313525,22314484-22314640,
22314661-22314716
Length = 158
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/84 (23%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +1
Query: 310 ATNPKPAIPICHIHGCSVSILRPNAIPHFSISTHQFTTSSNGEARTATGSPLEFLYQS*A 489
AT P P+ + H+ VSIL + P + T F +SN + Q+
Sbjct: 9 ATAPSPSTVLAHLAAAKVSILLGLSDPELACVTSNFLPTSNSARGAVLAVAVADYIQNFK 68
Query: 490 NATKDFTSFXGKSY-LYTLPRRNR 558
+A + + + + Y + LP+ R
Sbjct: 69 SAKRAYVTIFAEIYGSFFLPKNER 92
>01_01_0450 -
3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/64 (25%), Positives = 28/64 (43%)
Frame = +1
Query: 40 NIHTSLQTKNFKQFYNSTCASLIKKINPHICTVFFTLQTGRKSYQTHDFLNALRIISQKN 219
+++T ++F S K+ CT+FFTL T QT D + ++++ K
Sbjct: 763 SVNTDYLAGEKRRFGGRNSISPFKRPRSSRCTIFFTLLTYNSCDQTEDVTDEVKLMDAKK 822
Query: 220 RFSY 231
Y
Sbjct: 823 AEKY 826
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Frame = -3
Query: 737 RRXVVMFYGAACVECQRLHAVWESVGATLK---SRINVARIDASLAGVNTAKRFHVGKLP 567
R +V FY C CQ L + + A L ++ +A++DA+ + A+++ V P
Sbjct: 91 RHVMVEFYAPWCAHCQALAPDYAAAAADLSPLAHQVALAKVDAT-EDTDLAQKYDVQGFP 149
Query: 566 AFLLF 552
L F
Sbjct: 150 TILFF 154
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 29.9 bits (64), Expect = 2.2
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = -3
Query: 737 RRXVVMFYGAACVECQRLHAVWESVGATLKS--RINVARIDASLAGVNTAKRFHVGKLPA 564
+ +V FY C C++L + + TLKS + +A++DA+ V F V P
Sbjct: 403 KNVLVEFYAPWCGHCKKLAPILDEAATTLKSDKDVVIAKMDATANDV--PSEFDVQGYPT 460
Query: 563 -FLLFRLGKVYRYD--LPXNDVKSFVAFAQDWYKNSKGEPVAVLASPFDD 423
+ + GK+ Y+ +++ F+ ++ +K + + A P D
Sbjct: 461 LYFVTPSGKMVPYESGRTADEIVDFIKKNKETAGQAKEKAESAPAEPLKD 510
>12_02_0750 +
22764481-22764771,22764871-22765383,22765470-22765601,
22765731-22766108
Length = 437
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 113 FFIKEAQVLL*NCLKFFVCKDVC 45
FF+ AQVL C+KF C+D C
Sbjct: 355 FFVLNAQVL--ECIKFVACRDKC 375
>05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604
Length = 312
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 250 FVSFSGFDLPALIIAIKAVKATNPKPAIPICHIHGCS 360
F ++SG + P+ + + ++ NP + I +HGCS
Sbjct: 99 FSTYSGCNAPSADLKLASLLGLNPSVSCTILSLHGCS 135
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +3
Query: 342 PYPWVFCEYIETECYSPFQHFYTPIHHIIKW*GKNCNR-FSFRVFIPILSKCNKRFHIIX 518
P PWV CEYI + Q T + HI K +R S VF+ L C K
Sbjct: 121 PSPWVPCEYIFG--HKDQQTCKTWVEHIKTCINKEQDRPKSLMVFVHPL--CGKGRGCKN 176
Query: 519 WQVISVHFAKAKQK 560
W+ ++ F +AK K
Sbjct: 177 WETVAPLFERAKVK 190
>12_02_0754 -
22817277-22817657,22817796-22817927,22818026-22818272,
22818473-22818909
Length = 398
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -3
Query: 692 QRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAF 561
+R +W S L++R+N RI +A + + R H G + F
Sbjct: 58 RRWRPLWRSAPLNLEARVNGGRIAKDVATIRSTLRTHKGPVCRF 101
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 418 TTSSNGEARTATGSPLEFLYQS*ANATKDFTSFXGKS-----YLYTLPRRNR 558
++ +G +T +G+P+ F Y+ +AT +F + G+ YL TLP +R
Sbjct: 593 SSEDDGFLQTISGAPVRFTYRELQDATSNFCNKLGQGGFGSVYLGTLPDGSR 644
>05_04_0389 -
20845490-20845600,20845697-20846006,20846097-20846242,
20846319-20846426,20846508-20846615,20846997-20847109,
20847340-20847437,20847530-20847714,20847811-20847953,
20848293-20848377,20848486-20848624,20848686-20848780,
20848894-20849037,20849114-20849206,20849310-20849376,
20849529-20849641,20849750-20849845,20853885-20854058
Length = 775
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 319 PKPAIPICHIHGCSVSILRPNAIPHFSISTHQFTTSSNGEARTATGSPL 465
P P I C+ C + + PN+ ++ T +T+ SNG+ +A P+
Sbjct: 226 PDPVINTCNGLICGETFVGPNSPNKPALWTENWTSRSNGQNNSAFSYPI 274
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Frame = -3
Query: 737 RRXVVMFYGAACVECQRLHAVWESVGATLK--SRINVARIDASLAGVNTAKRFHVGKLPA 564
R +V FY C C++L +E +GA+ K + +A++D + ++ V P
Sbjct: 48 RAALVEFYAPWCGHCKKLAPEYEKLGASFKKAKSVLIAKVDCD-EHKSVCSKYGVSGYPT 106
Query: 563 FLLFRLGKV 537
F G +
Sbjct: 107 IQWFPKGSL 115
>06_03_1331 - 29389159-29390300,29390415-29390822,29390930-29391413
Length = 677
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
Frame = -2
Query: 678 CLGKCWSNIKEQNK--CCSH*CKFSWCQH 598
C+ K +SN +E+++ CC++ CK S +H
Sbjct: 152 CIHKLFSNARERSQFLCCAYPCKASHIEH 180
>05_01_0257 + 1967471-1967695,1968571-1969395
Length = 349
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 515 NDVKSFVAFAQDWYKNSKGEPVAVLASPFDDVVNWCVE 402
N++++ V F DW + G+ A LA D+ W V+
Sbjct: 280 NNLQNRVLFKSDWVLRTDGDAAADLAEYRDNATKWDVD 317
>03_02_0284 -
7092506-7092927,7093249-7093414,7093996-7094187,
7094289-7094510
Length = 333
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 340 CHIHGCSVSILRPNAIPHFSISTHQFTTSSNGEAR 444
C + GC SIL N+ SI + +F T +N AR
Sbjct: 71 CFVQGCDASILLDNST---SIVSEKFATPNNNSAR 102
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 549 AKQKECWQF-SNMKSFSSVDTS*TCINASNIYSAL*CCSNTF 671
A ++ C Q N S++ V T+ +CIN+ N L C+N F
Sbjct: 216 AGRESCAQAPKNRTSYACVSTNSSCINSPNATGYLCACNNGF 257
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 28.3 bits (60), Expect = 6.7
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 651 KEQNKCCSH*CKFSWCQH 598
++QN C + CK WC+H
Sbjct: 196 RQQNNACHYLCKKRWCRH 213
>09_06_0286 +
22040904-22040936,22041342-22041680,22041948-22042190,
22042285-22042434,22043659-22044045
Length = 383
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/55 (25%), Positives = 31/55 (56%)
Frame = -3
Query: 710 AACVECQRLHAVWESVGATLKSRINVARIDASLAGVNTAKRFHVGKLPAFLLFRL 546
A+ ++C +L A + + + R+N + +L+ V AK++ GK+P+ + F +
Sbjct: 314 ASSLQCLKLDAGYGFDTSGMCKRMNKLDVLHALSAVEVAKKYIEGKVPSSVKFNI 368
>05_02_0131 - 6919143-6920125,6920334-6920529
Length = 392
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 250 FVSFSGFDLPALIIAIKAVKATNPKPAIPICHIHGCS 360
F ++SG P+ + + ++ NP + I +HGCS
Sbjct: 135 FSTYSGCSAPSADLKLASLLGLNPSVSRTILSLHGCS 171
>05_02_0130 - 6906540-6907522,6908542-6908737
Length = 392
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 250 FVSFSGFDLPALIIAIKAVKATNPKPAIPICHIHGCS 360
F ++SG P+ + + ++ NP + I +HGCS
Sbjct: 135 FSTYSGCSAPSADLKLASLLGLNPSVSRTILSLHGCS 171
>05_02_0128 - 6890918-6891900,6892929-6893124
Length = 392
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +1
Query: 250 FVSFSGFDLPALIIAIKAVKATNPKPAIPICHIHGCS 360
F ++SG P+ + + ++ NP + I +HGCS
Sbjct: 135 FSTYSGCSAPSADLKLASLLGLNPSVSRTILSLHGCS 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,819,099
Number of Sequences: 37544
Number of extensions: 353060
Number of successful extensions: 909
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -