Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B04
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        27   0.24 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   2.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   6.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   6.9  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 536 YRYDLPXNDVKSFVAFAQDWYKNSKGEPVAVLASP 432
           ++Y L   +V       Q+W    +GE +A+L  P
Sbjct: 55  HKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDP 89


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = -3

Query: 620 ASLAGVNTAKRFHVGKLPAFLLFRLGKVYRYDLPXNDVKSFVAFAQD-------WYKNSK 462
           +S+A V  A   H G +P  +L   G V+   +  ++  S V  AQ        WY  + 
Sbjct: 222 SSVANVRIAD--HRGVMPPVILENSGVVH---VAQDESTSLVCVAQACPTPEYRWYAQTG 276

Query: 461 GEPVAVLASP 432
            EP+ VL+ P
Sbjct: 277 SEPMLVLSGP 286


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
 Frame = -3

Query: 620 ASLAGVNTAKRFHVGKLPAFLLFRLGKVYRYDLPXNDVKSFVAFAQD-------WYKNSK 462
           +S+A V  A   H G +P  +L   G V+   +  ++  S V  AQ        WY  + 
Sbjct: 222 SSVANVRIAD--HRGVMPPVILENSGVVH---VAQDESTSLVCVAQACPTPEYRWYAQTG 276

Query: 461 GEPVAVLASP 432
            EP+ VL+ P
Sbjct: 277 SEPMLVLSGP 286


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 355 CSVSI-LRPNAIPHFSISTHQFTTSSNGEARTATGSPLEFL 474
           C++   L PN   ++ I  +   + S+  A  ATG PL ++
Sbjct: 108 CNIQYALNPNTEEYYIIEVNARLSRSSALASKATGYPLAYV 148


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 37  LNIHTSLQTKNFKQFYNSTCASLIKKIN 120
           L+  T     N+K  YN+ C  L   IN
Sbjct: 85  LSNKTIHNNNNYKYNYNNNCKKLYYNIN 112


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 690 KATCCLGKCWSNIKEQNK 637
           K  CC G C   +KE +K
Sbjct: 455 KTFCCKGYCMDLLKELSK 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,758
Number of Sequences: 438
Number of extensions: 4468
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)