Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B02
         (356 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical p...    27   5.1  
Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical pr...    27   5.1  
Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    26   6.7  
X59156-4|CAA41874.1|  141|Caenorhabditis elegans transposase pro...    26   6.7  
AC006641-4|AAF39819.2|  477|Caenorhabditis elegans Hypothetical ...    26   6.7  

>Z68760-10|CAL49442.1| 1427|Caenorhabditis elegans Hypothetical
           protein F36H1.2c protein.
          Length = 1427

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 259 VNIYIIAWSVYILFWL*FIEVLIQ*Y 182
           V  Y+I+WSV++L ++ F  +++  Y
Sbjct: 515 VTAYLISWSVFLLIFIIFCSLIVVVY 540


>Z68760-9|CAJ80808.1| 1379|Caenorhabditis elegans Hypothetical
           protein F36H1.2b protein.
          Length = 1379

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 259 VNIYIIAWSVYILFWL*FIEVLIQ*Y 182
           V  Y+I+WSV++L ++ F  +++  Y
Sbjct: 515 VTAYLISWSVFLLIFIIFCSLIVVVY 540


>Z68760-8|CAA92996.1| 1398|Caenorhabditis elegans Hypothetical
           protein F36H1.2a protein.
          Length = 1398

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 259 VNIYIIAWSVYILFWL*FIEVLIQ*Y 182
           V  Y+I+WSV++L ++ F  +++  Y
Sbjct: 515 VTAYLISWSVFLLIFIIFCSLIVVVY 540


>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 282 YVVCYAALLISTLLLGVCTYYFGYNLLK 199
           Y +    ++ISTL+   C+Y++GY ++K
Sbjct: 145 YFLTLFLIIISTLIS--CSYFYGYKIIK 170


>X59156-4|CAA41874.1|  141|Caenorhabditis elegans transposase
           protein.
          Length = 141

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 134 TNSLFIFNSEIIMQRCILLY 193
           TN+LF + S  +M+RC++L+
Sbjct: 60  TNTLFFYFSHPMMKRCLILF 79


>AC006641-4|AAF39819.2|  477|Caenorhabditis elegans Hypothetical
           protein F45D11.6 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 134 TNSLFIFNSEIIMQRCILLY 193
           TN+LF + S  +M+RC++L+
Sbjct: 207 TNTLFFYFSHPMMKRCLILF 226


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,228,583
Number of Sequences: 27780
Number of extensions: 128320
Number of successful extensions: 330
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)