Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_B02
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   0.82 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   0.82 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   0.82 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   7.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   7.6  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   7.6  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -2

Query: 274 VLCCFVNIY---IIAWSVYIL 221
           VL C+ NIY   I+AW+++ L
Sbjct: 106 VLSCWTNIYYIIILAWALFYL 126


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 10/21 (47%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -2

Query: 274 VLCCFVNIY---IIAWSVYIL 221
           VL C+ NIY   I+AW+++ L
Sbjct: 159 VLSCWTNIYYIIILAWALFYL 179


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 175 LHYNLTVENKQTVSCKLGCLPTFD 104
           + YN   EN QT + K+G  P++D
Sbjct: 535 IQYNTRAENHQTGTAKMG--PSYD 556


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 184 YAALHYNLTVENKQTVSCKLGCLPTFDKITTRRTR 80
           Y A  ++  + N Q+++ +  C P F    + +TR
Sbjct: 789 YYAASFHTDIGNSQSLAHQDQCCPGFTMTKSGKTR 823


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 250 YIIAWSVYILFWL*FIEVLIQ*YAALHY 167
           Y+ A  +Y++    F+   +  YAA++Y
Sbjct: 300 YVKAIDIYLVMCFVFVFAALLEYAAVNY 327


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 201 SINYNQNSMYT 233
           SIN+N+N ++T
Sbjct: 549 SINFNENKLHT 559


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 201 SINYNQNSMYT 233
           SIN+N+N ++T
Sbjct: 549 SINFNENKLHT 559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,260
Number of Sequences: 438
Number of extensions: 1499
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)