Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A21
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    29   0.47 
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   3.3  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    27   3.3  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    26   5.8  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1364

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -3

Query: 489  VLVYRTEKYQKLKVEVERQSKKLEKRKE 406
            +L    EK +KLKVEVER+ + L +++E
Sbjct: 1074 LLAQAQEKLEKLKVEVERRRRLLSEKEE 1101


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -3

Query: 258 FNSIFDGRVV----AKLPFYPISWIQGLSHRNLP 169
           FN IF   +V     +LP+Y   WI    +R LP
Sbjct: 8   FNYIFGSEIVNDVKKRLPYYKSDWIDACHYRVLP 41


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 160 LHRLFFHIFVHSVYNEHQTKHTKVA 86
           LHR+ F IFVHS  N     H + A
Sbjct: 79  LHRILFPIFVHSYLNLLSQDHYEAA 103


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
 Frame = -3

Query: 276 TALLSMFNSIFDGRVVAKLPF-----YPISWIQGLSHRNLPGDDYTDCSFIFLYILCTMS 112
           T +++  N  F G ++ KLPF     +   +  G++ ++L   D    S I  Y L    
Sbjct: 127 TIIMTWINEFFSGFILLKLPFPLTLRFKSIFQSGVATQDL---DVQWVSSISWYFLNLFG 183

Query: 111 IRQNIQKLLG--FAPSRAASKQGGALFAAPQNTRQ 13
           ++     LLG   A S A ++ G A F++   T Q
Sbjct: 184 LKSVYALLLGENNAASNATNEMGMAGFSSAAATAQ 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,787
Number of Sequences: 5004
Number of extensions: 44329
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)