Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A21
         (677 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50044-9|CAA90361.1|  186|Caenorhabditis elegans Hypothetical pr...   223   9e-59
U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine rece...    30   1.3  
Z80223-2|CAB02320.1|  344|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U80024-3|AAK18893.1|  342|Caenorhabditis elegans Seven tm recept...    28   5.3  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    28   5.3  
AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical ...    28   5.3  

>Z50044-9|CAA90361.1|  186|Caenorhabditis elegans Hypothetical
           protein F22B5.10 protein.
          Length = 186

 Score =  223 bits (545), Expect = 9e-59
 Identities = 106/180 (58%), Positives = 137/180 (76%)
 Frame = -3

Query: 561 MWSDSLLIVFISICTAFLGEGLTWVLVYRTEKYQKLKVEVERQSKKLEKRKEAHGDSLDX 382
           M  D LLI+ I+  TA  GEG+TW+LVYR++ Y++LK ++++++KKLEK+K+  GD+ D 
Sbjct: 1   MLGDCLLIIAIAFGTALAGEGITWLLVYRSDHYKRLKADMDKKTKKLEKKKQEVGDTNDK 60

Query: 381 XXXXXXXXXXXXXXXXXRDLSLVKMKSMFAIGFAFTALLSMFNSIFDGRVVAKLPFYPIS 202
                            RD+S+ KMKSMFAIG AFTALLS FNSIF+GRVVAKLPFYPI 
Sbjct: 61  NIKRKLEREEERLKATNRDMSMFKMKSMFAIGLAFTALLSTFNSIFEGRVVAKLPFYPIG 120

Query: 201 WIQGLSHRNLPGDDYTDCSFIFLYILCTMSIRQNIQKLLGFAPSRAASKQGGALFAAPQN 22
           +IQGLSHRNL G+D TDCSFIFLYILCTM++RQN+QK+LGFAPSRA ++Q  + +A P +
Sbjct: 121 FIQGLSHRNLIGEDMTDCSFIFLYILCTMTVRQNLQKILGFAPSRAMARQQSSPWAPPNS 180


>U23179-2|AAK68207.1|  345|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 5 protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 77  AKPSNFCMFCLMLIVHRMYKN 139
           AK  NFC  C++LI H+ +KN
Sbjct: 196 AKIGNFCCNCVLLIFHKRFKN 216


>Z80223-2|CAB02320.1|  344|Caenorhabditis elegans Hypothetical
           protein F26D10.8 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 115 EHQTKHT-KVAWFCTFSSCFKTRWCSICCPAE 23
           +H  +HT K  W   +++CF+  W +   PAE
Sbjct: 26  KHSPQHTGKYKWLMMYTTCFEIFWGAFDLPAE 57


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 483 VYRTEKYQKLKVEVERQSKKLEKR-KEAH 400
           +YRTE ++K+K   ER  +  EKR KE H
Sbjct: 850 IYRTELWEKMKPVYERLKRDKEKREKEWH 878


>U80024-3|AAK18893.1|  342|Caenorhabditis elegans Seven tm receptor
           protein 190 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -2

Query: 124 VYNEHQTKHTKVAWFCTFSSCFKTRWCSICCPAEHQAXGGG 2
           ++ +   +  K  W  TF++CF+  W     PAE  A   G
Sbjct: 22  IWTKSPVQTGKYRWLMTFTACFEIFWGLFDLPAEIIAHSAG 62


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 483 VYRTEKYQKLKVEVERQSKKLEKR-KEAH 400
           +YRTE ++K+K   ER  +  EKR KE H
Sbjct: 850 IYRTELWEKMKPVYERLKRDKEKREKEWH 878


>AL110485-7|CAB60355.1|  237|Caenorhabditis elegans Hypothetical
           protein Y46G5A.12 protein.
          Length = 237

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/26 (38%), Positives = 20/26 (76%)
 Frame = -3

Query: 462 QKLKVEVERQSKKLEKRKEAHGDSLD 385
           QK+ +E E+QS+ ++ ++E  GD++D
Sbjct: 123 QKIMMEFEKQSEIMDMKEEVMGDAID 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,494,691
Number of Sequences: 27780
Number of extensions: 251253
Number of successful extensions: 784
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)