Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_A18
(663 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.004
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 0.79
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 27 3.2
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 4.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.2
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 26 4.2
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 26 5.6
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 5.6
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.4
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.4
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 36.3 bits (80), Expect = 0.004
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 567 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 430
VY+PD Y+P+ V YYPQQP P+F ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.79
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = -2
Query: 242 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 66
SHHP +P C P + P PQ+P+H V SP P P + N
Sbjct: 136 SHHPPLHNPLPVSCQ------PVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +1
Query: 127 TCAVCVGNCGRASGTTCGPTSPSEEHWE 210
TCA+C+ C + C S E +E
Sbjct: 83 TCAICIRQCHKCESNVCSMCSKQERTFE 110
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = -2
Query: 194 DGEVGPQVVPEARPQLPTHTAQ------VEEASPQATPPPTVDPDRMKNCKP 57
DG G P+ + Q T +AQ VE+ +PQ T P VD + P
Sbjct: 366 DGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAP 417
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = -2
Query: 602 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 462
S H + + +++ +P+P YR + TLSN++T S
Sbjct: 45 SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 361 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 450
+G FG+ N +GG F + SG FG+
Sbjct: 64 NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -1
Query: 636 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 526
+G GM+AF++ P P+ +VY RR T ++
Sbjct: 9 LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 621 AAFMYRQPEAAQAPSTGQVYIP 556
A F+Y +PE+ +PS G YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 150 LRSGLRDHLRPYLPIRRTLGRTRMWALWVVRS 245
LR+ + L +LP RRT G ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = -1
Query: 528 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 400
TS+ PQ ++ +Y + + S T+ + + T K++ S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = -1
Query: 510 QENEVYYPQQPENPIFSPTQATELADPTE 424
+ N YPQ + P+ P A DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,783
Number of Sequences: 5004
Number of extensions: 50017
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -