Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A17
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    31   0.11 
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    29   0.57 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    26   4.0  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.2  

>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 31.1 bits (67), Expect = 0.11
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +1

Query: 13  VQHITTEWQNIQILITNVYLQNIKDIALYVISRY*I*KR 129
           ++H   +W+N+ +  + V+L NI   AL +ISR+   KR
Sbjct: 156 IKHFLKKWENMPMAFSEVFLFNIFGGALRIISRHFFGKR 194


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 28.7 bits (61), Expect = 0.57
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 196 NNHNG*FCKSYKKYQIISNEQDIITLL 276
           +NH+G   K++KKYQ+I   +D +T L
Sbjct: 293 SNHSGIESKTFKKYQVIEALKDPVTWL 319


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 220 KSYKKYQIISNEQDIITLL 276
           +S KKY +ISN QD I  L
Sbjct: 38  ESLKKYPVISNPQDFIVTL 56


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 499 TILAMIYLSNSNTLCINESE*FVHCLISFFTA 404
           T  +++Y      L   ESE F H +I+FF A
Sbjct: 157 TNTSLLYRQKKFNLLREESEGFSHLMINFFDA 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,067,894
Number of Sequences: 5004
Number of extensions: 39776
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)