Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A17
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF039049-10|AAB94247.1|  548|Caenorhabditis elegans Cytochrome p...    27   8.3  

>Z82075-2|CAB60333.1|  328|Caenorhabditis elegans Hypothetical
           protein W07A8.5 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/55 (27%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = -3

Query: 488 DDLFIKLKYFMYK*VGVVCTLSHFVFYCILAKVSNHNL*VL--*GNKPIFAEKKI 330
           +D++ + + F+ K + +V TLS+FV  C+   ++ + L ++    ++ IF++K+I
Sbjct: 74  EDIYTEYRQFIGKEITLVGTLSYFVPMCVSVLMTLNRLFIVIKPTDQAIFSQKRI 128


>AF039049-10|AAB94247.1|  548|Caenorhabditis elegans Cytochrome p450
           family protein 35B1 protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 424 LISFFTAYLQRLVIIIYKSCRVTNQSSLRKK*NLVMTFRQINSEQRQDYEE 272
           L SFF +  +R+V I  K+    ++ +L +   L      +N+E  QD+ E
Sbjct: 274 LKSFFPSRFERVVAIFEKALNYLSREALARYEKLKTGEYSVNAEDPQDFVE 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,288,581
Number of Sequences: 27780
Number of extensions: 219552
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)