Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A15
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.09c |cox13||cytochrome c oxidase subunit VIa|Schizosacc...    52   6e-08
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   9.8  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    24   9.8  

>SPCC1739.09c |cox13||cytochrome c oxidase subunit
           VIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 130

 Score = 51.6 bits (118), Expect = 6e-08
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = -2

Query: 288 WKRMSFFVAFPAIALGMLNAYLAH--QEEH--HERPPFVPYEYMRIRTKRFPWGDGQKSL 121
           WK++++++  PA+ L   NAY  +   +EH  H       Y +  +R K++PWGDG K+L
Sbjct: 57  WKKVTYYIGGPALILASANAYYIYCKHQEHAKHVEDTDPGYSFENLRFKKYPWGDGSKTL 116

Query: 120 XHXPHVNAL 94
                VN L
Sbjct: 117 FWNDKVNHL 125


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -2

Query: 228 YLAHQEEHHERPPFVPYEYMRIR-TKRFPWGDGQ-KSLXHXPHVNALPSG 85
           YLA   +  E PP V YE++  R    F   DGQ K +    +++ +  G
Sbjct: 320 YLASDTKPDEEPPRVIYEHVNDRWDVAFAVSDGQFKQVSFVNNISTIRGG 369


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 200 NVRH--LYLMNTCAFVQSVSHGVMDRSPXSTTLM*MPFPAVMKMTTK 66
           NVR   LY  +  AFV+ V+   +D S  ++T   + +  +MK  +K
Sbjct: 92  NVRRKMLYASSRAAFVRCVTLAKLDESYFASTPEELDYQQIMKSLSK 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,048
Number of Sequences: 5004
Number of extensions: 27134
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)