Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A15
         (463 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0120 + 31804301-31804412,31804525-31804631,31804714-318047...    31   0.34 
10_02_0174 - 6202334-6204922                                           27   9.7  
04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    27   9.7  

>03_06_0120 +
           31804301-31804412,31804525-31804631,31804714-31804756,
           31806069-31806187
          Length = 126

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 288 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTKRFPW 142
           W+++++        L   N    H   H + PP   Y Y+ IR K FPW
Sbjct: 43  WEKITYAGIVTCTLLAAYNLSKGHP--HFDEPP--AYPYLHIRNKEFPW 87


>10_02_0174 - 6202334-6204922
          Length = 862

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -2

Query: 222 AHQEEHHERPPFVPYEYMRIRTKRFPW-GDGQ-KSLXHXPHVNALPSGYEDDH*ITII 55
           A  E  H+      Y  M  +     W GDG   S+ + PH+ A   GY+ D  ++II
Sbjct: 346 ASSESKHKPKWLDDYSAMITQAVLTGWFGDGMANSVMYNPHLVARQFGYDQDFPVSII 403


>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 127  LLSITPWETLCTNAHVFIRYKWRTFMVFLL 216
            LL+ TPW+ +C N +V +    R+ + F L
Sbjct: 946  LLNATPWDDICDNDNVDLSAIGRSLLQFSL 975


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,426,575
Number of Sequences: 37544
Number of extensions: 180072
Number of successful extensions: 327
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 327
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)