Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_A14
(814 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.59
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar... 29 1.0
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 29 1.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.0
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 27 2.4
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 3.2
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 3.2
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 4.2
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 27 4.2
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 26 5.5
SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|... 26 5.5
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 26 5.5
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 26 5.5
SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual 26 5.5
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 26 7.3
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 7.3
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 26 7.3
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 26 7.3
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 25 9.7
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 25 9.7
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 9.7
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.7
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 9.7
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 25 9.7
SPBC3B9.03 |||signal recognition particle receptor alpha subunit... 25 9.7
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.59
Identities = 42/243 (17%), Positives = 97/243 (39%), Gaps = 2/243 (0%)
Frame = -3
Query: 731 SSSVKSDENNMVIKHLMSDLKLAEPTFMFNPVDVENMQYQIRTYCKQIGWLENSDEIVCK 552
+SSV + + + + L E F + ++ Q+ T +++ E E + +
Sbjct: 170 TSSVTTLTSEEDVSYFQKKLTNMESNFSAKQSEAYDLSRQLLTVTEKLDKKEKDYEKIKE 229
Query: 551 VITVLPNELTDLNMSCENFKKYFMNYNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEE 372
++ + L + S ++ + ++ L V + +++L+ N +L E+
Sbjct: 230 DVSSIKASLAEEQASNKSLRG---EQERLEKLLVSSNKTVSTLRQTENSLRAECKTLQEK 286
Query: 371 FRTLNWLLEN-KLLFEIKHKAINYEDEDEIECFILAKRRKLHIDSLENLVLDDKDSTMVE 195
E+ KLL E+KH NY D + L + I +NL + ++
Sbjct: 287 LEKCAINEEDSKLLEELKHNVANYSDA-IVHKDKLIEDLSTRISEFDNLKSERDTLSIKN 345
Query: 194 ENITN-AEDGISKYRNCTEAVKQLEMQLEEGRQKSIEFENMLQAARANVEVWRQKXNFLH 18
E + + I ++ + QLE ++ E ++ + + L A + + + Q+ L
Sbjct: 346 EKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQENKSLK 405
Query: 17 ENV 9
++
Sbjct: 406 GSI 408
>SPMIT.02 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 384
Score = 28.7 bits (61), Expect = 1.0
Identities = 38/162 (23%), Positives = 77/162 (47%), Gaps = 18/162 (11%)
Frame = -3
Query: 497 FKKYFMNYNLIDMLNVIVYEKINSLKNFG---NRYAIYKPSLLEEFRTLNWL---LENKL 336
FKK F+ +++ N+ +EK + L+ Y P LE++ T +WL +E +
Sbjct: 205 FKKAFL---ILEDANLNSFEKNSKLEEIRIEKKSLKQYSPVNLEKYLTKSWLIGFIEAEG 261
Query: 335 LFEIKHKA-----INYEDEDEIECFILAKRRKLHIDS-LENLVLDDKDSTMVEENI-TNA 177
F + K+ +E E +LA+ + +S + + K+S + ++ T++
Sbjct: 262 SFYLLQKSPVRIIHGFEITQNYEQPLLAQISEFLFNSQISPKIKSKKNSLITNYSLSTSS 321
Query: 176 EDGI----SKYRNCTEAVKQLEMQL-EEGRQKSIEFENMLQA 66
++ + S + NC + VK LE ++ +K+ FE +L+A
Sbjct: 322 KERMLFLSSYFENCFKGVKSLEFKIWSRSLRKNYNFEQLLRA 363
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 28.7 bits (61), Expect = 1.0
Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Frame = -3
Query: 329 EIKHKAINYEDEDEIECFILAKR-RKLHIDSLENL-VLDDKDSTMVEENITNAEDGISKY 156
+++ I ++EDE+ I K+ RK H +S + +LD++D +V EN T SK
Sbjct: 67 QVREGFIVEDEEDEVPQEIRRKKKRKKHAESTADQDMLDEEDLELVMEN-TGQGSRFSKL 125
Query: 155 RNC------TEAVKQLEMQLEEGRQKSIEFE--NMLQAARANV 51
R E ++ + + EE + ++ E N Q RA V
Sbjct: 126 RRLKRGRDQEETLENIFSEEEEEEENEVDDEAPNRTQGHRAGV 168
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.0
Identities = 30/118 (25%), Positives = 47/118 (39%)
Frame = -3
Query: 524 TDLNMSCENFKKYFMNYNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLNWLLE 345
TD+ EN KY Y+ ID + ++ +NS F Y+I K E F +
Sbjct: 1194 TDMLTKLENTVKYLCEYDSIDKVRNSFFKNLNS---FYEMYSIAKAENEERFEK----EK 1246
Query: 344 NKLLFEIKHKAINYEDEDEIECFILAKRRKLHIDSLENLVLDDKDSTMVEENITNAED 171
+++ E + K I + I +R+L DS + KD +E ED
Sbjct: 1247 RRIMSEDRDKLIRGRQKTSIVA-KYRNKRELPEDSDDKQDTASKDKNSLETIDEKMED 1303
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 27.5 bits (58), Expect = 2.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = -3
Query: 614 QIRTYCKQIGWLENSDEIVCKVITVLPNELTDLNM 510
Q+R CK +GW + ++++ + L E++ L++
Sbjct: 258 QVRALCKLLGWSDELEKLIDTSVETLTEEISLLSV 292
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 788 EFKKYLDDNSPYPKPYEFISSSVKSDEN 705
+ K+ DD +PYP PY+ ++S S N
Sbjct: 387 DLSKHQDDIAPYPNPYQNYTTSNTSVVN 414
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 788 EFKKYLDDNSPYPKPYEFISSSVKSDEN 705
+ K+ DD +PYP PY+ ++S S N
Sbjct: 387 DLSKHQDDIAPYPNPYQNYTTSNTSVVN 414
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 392 KPSLLEEFRTLNWLLEN---KLLFEIKHKAINYEDEDEIECFILAKRRKLHIDSLENLVL 222
+P + E RT N L+++ KLL ++ AI E D+ E + + I S L L
Sbjct: 796 QPLKIYEHRTNNVLMDSGRGKLLQKMVADAITEEGYDDFETIVTINHLENKIASARLLKL 855
Query: 221 DDK 213
DD+
Sbjct: 856 DDE 858
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 4.2
Identities = 26/119 (21%), Positives = 56/119 (47%)
Frame = -3
Query: 611 IRTYCKQIGWLENSDEIVCKVITVLPNELTDLNMSCENFKKYFMNYNLIDMLNVIVYEKI 432
+R Y K + E++ I+ +IT L +++++ +M ++ YNL+D + IV+E++
Sbjct: 694 LRFYRKSMA-TESNWTILMFMITHLADQISNRSMFIGALEEI---YNLLDFMCDIVFERV 749
Query: 431 NSLKNFGNRYAIYKPSLLEEFRTLNWLLENKLLFEIKHKAINYEDEDEIECFILAKRRK 255
+ PS + + + +L+N + + H + EDE+ A +K
Sbjct: 750 SISAEI--------PSNIRKANIMIPILQNVQMLFVYHDQFSRAQEDELVSVFFAGLQK 800
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 134 KQLEMQLEEGRQKSIEFENMLQAAR 60
++LE+QLEEG S E EN L +
Sbjct: 33 RRLELQLEEGNGISAELENDLDITK 57
>SPAC56F8.14c |mug115||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 131
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 151 IAQKLSNSLKCNSKRAGKNQLNLRICSKQRAQMLKCGDR 35
+ +K +K ++ K QL + KQRAQ + CG R
Sbjct: 18 LVRKGLGKIKGDTDMCDKQQLKKKEKEKQRAQKVACGPR 56
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 7/63 (11%)
Frame = -3
Query: 359 NWLLENKLLF------EIKHKAINYEDEDEIECFILAKRRKLHIDS-LENLVLDDKDSTM 201
NW+ E + EIK KAI + DE + R++L D+ E++++D +++
Sbjct: 461 NWVYEQNIYMYILVPEEIKKKAIALIESDESSKNDMQLRKQLEQDNGKESIIIDPHSASL 520
Query: 200 VEE 192
+E+
Sbjct: 521 LEQ 523
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 386 SLLEEFRTLNWLLENKLLFEIKHKAINYEDEDEIEC 279
SLLE++R +++LLEN L K + ED D C
Sbjct: 723 SLLEDWRLVSFLLENSALLLEKFEE---EDVDSTNC 755
>SPAC17C9.12 |||MSP domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -3
Query: 767 DNSPYPKPYEFISSSVKSDENN 702
+N PYPKP +++ ++ENN
Sbjct: 222 ENEPYPKPQSVPTTTSPNNENN 243
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 25.8 bits (54), Expect = 7.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 788 EFKKYLDDNSPYPKPY 741
+FK++L SPY KPY
Sbjct: 31 DFKEHLTSRSPYHKPY 46
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 758 PYPKPYEFISSSVKSDENNMVIKHLMSDLKLAEPTFMFNPVDV 630
P P ++ S+ ++ E + + ++DL+ AEP+ N V+V
Sbjct: 424 PQPANLDYSSAIQRAQERLTLEESKLTDLRTAEPSQYVNDVEV 466
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.3
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -3
Query: 779 KYLDDNSPYPKPYEF 735
KY+++ P P+PYE+
Sbjct: 450 KYMEEEKPVPEPYEY 464
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1115
Score = 25.8 bits (54), Expect = 7.3
Identities = 30/124 (24%), Positives = 60/124 (48%), Gaps = 1/124 (0%)
Frame = -3
Query: 476 YNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLNWLLENKLLFEIKHKAINYED 297
YN++ + + Y+K+ L N G + + L ++FR +N L+ + +
Sbjct: 969 YNVVPLK--VAYKKLRLLVNAGCIFVGH--GLQKDFRIINLLVPPEQVV----------- 1013
Query: 296 EDEIECFILAKR-RKLHIDSLENLVLDDKDSTMVEENITNAEDGISKYRNCTEAVKQLEM 120
D ++ F L+ R RKL + L +LD++ ++I +A + Y +C + +K +
Sbjct: 1014 -DTVDLFFLSSRQRKLSLKFLAWYLLDEEIQLTEHDSIEDALTALKLY-DCYDKLKS-QG 1070
Query: 119 QLEE 108
+LEE
Sbjct: 1071 KLEE 1074
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = -3
Query: 230 LVLDDKDSTMVEENITNAEDGISKYRNCTEAVKQLEMQLEEGRQKSIEFEN 78
L+ D + ++E+++ NA+ R EAV E G ++F N
Sbjct: 1076 LINDSDEDELIEDSLANAQQHAEVNRTYLEAVAGKE-SFRRGLNNRVKFSN 1125
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 23 KNSPSVSTLQHLRALLGAYSQIQLI 97
KN P +T + +++LLGAY Q++ +
Sbjct: 726 KNLPFEATKKDVQSLLGAYGQLRSV 750
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -3
Query: 218 DKDSTMVEENITNAEDGISKYRNCTEAVKQLE 123
DKDS + EN++N + + +R + + +Q E
Sbjct: 444 DKDSGISSENVSNNREELPSFRKRSSSSRQSE 475
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 640 LWMLKICSIKFELTANKLVGSKIPMK 563
+W CS K E TAN GS P K
Sbjct: 286 IWYEGDCSFKAETTANIKFGSHFPSK 311
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -3
Query: 434 INSLKNFGNRYAIYKPSLLEEFRTLN 357
IN + FG R ++KP+L ++FR++N
Sbjct: 154 INKTRAFGMR--LWKPALYKKFRSIN 177
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/47 (29%), Positives = 19/47 (40%)
Frame = -3
Query: 806 YPSFALEFKKYLDDNSPYPKPYEFISSSVKSDENNMVIKHLMSDLKL 666
Y FAL + YL + P+ Y + D N + L LKL
Sbjct: 251 YLKFALPYLSYLWTSGPFRDTYTRFGYDPRKDSNAAAYQALFFKLKL 297
>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
Srp101|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.7
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = -3
Query: 476 YNLIDMLNVIVYEKINSLKNFGNRYAIYKPSLLEEFRTLN 357
+ +++ +++++K NSL N ++ + L E RT+N
Sbjct: 5 FAIVNKGGIVLWKKTNSLVNLKCLQVLFHEAFLSEQRTVN 44
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,098,207
Number of Sequences: 5004
Number of extensions: 62769
Number of successful extensions: 244
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -