Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_A14
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 30 2.5
01_01_0575 - 4271910-4272371,4272923-4272928,4272999-4273174,427... 29 4.4
02_05_1326 - 35712102-35712473,35712608-35712720,35712944-357148... 29 5.8
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 28 7.7
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 28 7.7
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 28 7.7
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/81 (30%), Positives = 40/81 (49%)
Frame = -3
Query: 257 KLHIDSLENLVLDDKDSTMVEENITNAEDGISKYRNCTEAVKQLEMQLEEGRQKSIEFEN 78
KL S EN +L +K T E + E SKY+ CTE K+ E L ++S++ +
Sbjct: 903 KLQDMSAENALLMEK-LTESERYVQEHESCESKYKACTEDRKRFEDLL---MKESLQTSH 958
Query: 77 MLQAARANVEVWRQKXNFLHE 15
+ R+ VE + + LH+
Sbjct: 959 LKDELRSVVENFEAMKDELHK 979
>01_01_0575 -
4271910-4272371,4272923-4272928,4272999-4273174,
4274150-4275299
Length = 597
Score = 29.1 bits (62), Expect = 4.4
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Frame = -3
Query: 431 NSLKNFGNRYAIYKPSLLEEFRTLNWLLENKLLFEIKHKAINYEDEDEIEC---FILAKR 261
N + FG + +Y P E T L+EN E K + ++ E+E+E E + A
Sbjct: 211 NWSEKFGIKMELYAPDNNEVEMTEAPLVENATATEKKEEHVDEEEEEEEEDPEEMVPASE 270
Query: 260 RKLHIDSLENLVLDDKDSTMVEENITNAEDGISKYRNCTEAVKQLEMQLEEGRQKS-IEF 84
+ + +E +++D VE+ AE +K N + + + ++EE ++ S E
Sbjct: 271 EEADAEEVEK---EEEDPEEVEKEGGEAE---AKVANAAKTGEVEKRKVEEDKKASGREV 324
Query: 83 ENMLQAARANVEVWRQ 36
+ + +A V+++ Q
Sbjct: 325 KEGEKGGQAEVQIFLQ 340
>02_05_1326 - 35712102-35712473,35712608-35712720,35712944-35714857,
35714942-35715135,35715237-35716786,35716946-35717049,
35717258-35717399,35717692-35717910
Length = 1535
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = -3
Query: 479 NYNLIDMLNVIVYEKINSLKNFGNRYA---IYKPSLLEEFRTLNWLLENKLLFEIKHKAI 309
N+NL D N ++++ +NS +N+GN + I + +++E ++ LL E+ +
Sbjct: 883 NFNLDDK-NTMMFQSVNSTENYGNNRSVEFIPETNMIETLEVAGESIDG-LLHEVSSNVV 940
Query: 308 N 306
N
Sbjct: 941 N 941
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 28.3 bits (60), Expect = 7.7
Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = -3
Query: 230 LVLDDKDSTMVEENITNAEDGISKY-RNCTEAVKQLEMQLEEGRQKSIEFENMLQAARAN 54
LV+DDKD ++ ++ +D +KY +N T ++ + E +K+I+ M+ N
Sbjct: 123 LVVDDKDEPLITMDLPREDDEAAKYIQNITIPSALIDKKFGEQLKKAIKDGEMV---NVN 179
Query: 53 VEVWRQ 36
++ WR+
Sbjct: 180 LD-WRE 184
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 236 ENLVLDDKDSTMVEENITNAEDGISKYRNCTEAVKQLEMQLEE 108
E LDD ++ MV++ + EDG++ T+ V+ E + EE
Sbjct: 46 ETQALDDAETQMVDDGLGEEEDGVAVDWGETQLVEGSEEEEEE 88
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 28.3 bits (60), Expect = 7.7
Identities = 33/143 (23%), Positives = 64/143 (44%), Gaps = 2/143 (1%)
Frame = -3
Query: 431 NSLKNFGNRYAIYKPSLLEEFRTLNWLLENKLLFEIKHK-AINYEDE-DEIECFILAKRR 258
N L N ++ SL + + L+ E KL E + K A Y+ E + ++ ++A++
Sbjct: 398 NDLDTKSNALKKWEESLQNDEKQLS---EQKLQIENERKQAEMYKLELESLKATVVAEKE 454
Query: 257 KLHIDSLENLVLDDKDSTMVEENITNAEDGISKYRNCTEAVKQLEMQLEEGRQKSIEFEN 78
K+ + NL L +++ + I +YR + ++ + L + RQK E
Sbjct: 455 KI-LQEQNNLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLSEETEDLRKQRQKFEEEWE 513
Query: 77 MLQAARANVEVWRQKXNFLHENV 9
L R ++E +K N +N+
Sbjct: 514 QLDEKRTHLEEEAKKLNNEKKNL 536
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,607,714
Number of Sequences: 37544
Number of extensions: 316120
Number of successful extensions: 939
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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