Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A11
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    85   5e-18
SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr 1|...    43   3e-05
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    25   9.4  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    25   9.4  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 85.4 bits (202), Expect = 5e-18
 Identities = 44/96 (45%), Positives = 55/96 (57%)
 Frame = -2

Query: 518 LGNLSIHILLKNLRPPGTKIXRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCA 339
           L N   HI+L++LRP G+K   IP   G       N VS PNY +E   WLFF ++TK  
Sbjct: 199 LSNFRTHIILRDLRPAGSKKRVIPTGYG------FNLVSFPNYFFESLGWLFFALLTKSW 252

Query: 338 PAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGRK 231
            + +F   G  QM VWA  KH  Y KEFP+YP+ RK
Sbjct: 253 ASWIFLFVGSAQMFVWAKKKHARYLKEFPNYPRSRK 288


>SPAC9.08c |||steroid reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 42.7 bits (96), Expect = 3e-05
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 431 PFSLLLNFVSCPNYTYEFGSWL--FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKE 258
           P+  L  +VSCPNY  E+  W   +        P   F  +    M   A+  H+ Y K+
Sbjct: 207 PYGGLFQYVSCPNYFCEWIEWFGCYLAAGPSAEPFWWFFLSEILLMLPRALKAHQWYCKK 266

Query: 257 FPDYPKGRKA 228
           FP YP  R+A
Sbjct: 267 FPKYPANRRA 276


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 21  QKPLPSNMSSDTHQGTNQYLFDISK-LSMSIFVNFLF 128
           Q  + S+MS+DT   +NQ L D  K L   +F++F F
Sbjct: 663 QSLILSSMSADTSNFSNQELVDFDKYLVELLFLSFAF 699


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 31  CPLICHPIPTKAPTNT 78
           CPL+CHP P    T T
Sbjct: 294 CPLLCHPGPCPPCTAT 309


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 482  LRPPGTKIXRIPKPDGNPFSLLLNFVSCPNY 390
            L PP T + R+ +P   P   L + ++C NY
Sbjct: 1587 LNPPLTVVRRLNEPPYVPDDYLPSVMTCVNY 1617


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -2

Query: 518 LGNLSIHILLKNLRPPGTKIXRIPKPDGNPFSL 420
           +GN+S+++L K++ PP   + ++   D   FS+
Sbjct: 402 IGNVSLYVLDKDIEPPQPLLSQLILVDEISFSV 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,294,481
Number of Sequences: 5004
Number of extensions: 48853
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)