Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A11
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0335 - 2706916-2706984,2707062-2707825,2710014-2710053,271...    65   3e-11
11_01_0535 + 4234282-4235082                                           31   0.44 
10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    28   4.1  

>01_01_0335 -
           2706916-2706984,2707062-2707825,2710014-2710053,
           2710105-2710173,2710268-2710336
          Length = 336

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
 Frame = -2

Query: 530 VLXELGNLSIHILLKNLRPP-GTKIXRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTI 354
           +L ++ N   HILL+NLR P G    +IP+        L N V+C NYT E   WL F I
Sbjct: 227 ILCQIANFYCHILLRNLRSPSGNGGYQIPR------GFLFNIVTCANYTTEIYQWLGFNI 280

Query: 353 MTKCAPAGLFAAAGFYQMAVWAIGKHRNYKK 261
            T+     +F       M  WA+GKHR  KK
Sbjct: 281 ATQTVAGYIFLVVAASIMTNWALGKHRRLKK 311


>11_01_0535 + 4234282-4235082
          Length = 266

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 32/103 (31%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
 Frame = -2

Query: 533 FVLXELGNLSIHILLKNLRPPGTKIXRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTI 354
           FV     N++    L  L+  G K  +IPK DG     L + V+CPNY  E   WL + +
Sbjct: 165 FVWGMWTNIAADRELLRLKEAG-KGYQIPK-DG-----LFDLVACPNYFGETVEWLGYAL 217

Query: 353 MTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKGRKA 228
           +     A  F       +   A  +   Y  +F D YP  RKA
Sbjct: 218 VAWTPAAWAFFLYTCVNLGPRARDQRLWYISKFGDKYPASRKA 260


>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 245 GSLGIPSCSCDVYRWPK 295
           G +G+ +C C++Y WP+
Sbjct: 23  GRIGVGACGCEMYVWPR 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,581,707
Number of Sequences: 37544
Number of extensions: 304346
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)