Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A11
         (534 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha...   169   8e-43
Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical pr...    56   2e-08
Z68115-3|CAA92168.1|  243|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z68222-3|CAA92499.1|  253|Caenorhabditis elegans Hypothetical pr...    41   6e-04
Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical p...    34   0.056
Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical p...    34   0.056
Z70782-11|CAA94848.1|  487|Caenorhabditis elegans Hypothetical p...    25   3.3  
Z70781-9|CAA94837.1|  487|Caenorhabditis elegans Hypothetical pr...    25   3.3  
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    28   4.8  

>AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha
           reductase familyprotein 1 protein.
          Length = 308

 Score =  169 bits (412), Expect = 8e-43
 Identities = 74/102 (72%), Positives = 83/102 (81%)
 Frame = -2

Query: 533 FVLXELGNLSIHILLKNLRPPGTKIXRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTI 354
           FV+ E GNLSIHILL+NLRP GT+  RIPKPDGNP SLL N+VSCPNYTYE  SW+FF+I
Sbjct: 201 FVISEFGNLSIHILLRNLRPAGTRERRIPKPDGNPLSLLFNYVSCPNYTYEVASWIFFSI 260

Query: 353 MTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKGRKA 228
           M +  PA +F  AGF QMA+WA GKHRNY KEFPDYPK RKA
Sbjct: 261 MVQSLPAIIFTTAGFAQMAIWAQGKHRNYLKEFPDYPKNRKA 302


>Z68116-2|CAA92173.1|  243|Caenorhabditis elegans Hypothetical
           protein F42F12.3 protein.
          Length = 243

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 32/89 (35%), Positives = 43/89 (48%)
 Frame = -2

Query: 494 LLKNLRPPGTKIXRIPKPDGNPFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAA 315
           +L  LR PG    +IP         L  ++SCPNY  E   W+ + I+    PA  FA  
Sbjct: 155 ILMTLRKPGETGYKIPT------GFLYEYISCPNYFGEIMEWIGYAILGWNLPALAFAIF 208

Query: 314 GFYQMAVWAIGKHRNYKKEFPDYPKGRKA 228
            F  +   AI  H  YK++FP YP  R+A
Sbjct: 209 TFANIGPRAIAHHNWYKEKFPKYPPTRRA 237


>Z68115-3|CAA92168.1|  243|Caenorhabditis elegans Hypothetical
           protein F19H6.4 protein.
          Length = 243

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = -2

Query: 431 PFSLLLNFVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFP 252
           P   L  ++SCPNY  E   W+ ++I+    PA  FA      +   A+  H+ YK+ FP
Sbjct: 170 PTGFLYEYISCPNYAGEIMEWIGYSILAWNLPALAFAIFTIANIGPRAVAHHKWYKETFP 229

Query: 251 DYPKGRK 231
            YP  R+
Sbjct: 230 GYPPNRR 236


>Z68222-3|CAA92499.1|  253|Caenorhabditis elegans Hypothetical
           protein ZK1251.3 protein.
          Length = 253

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = -2

Query: 410 FVSCPNYTYEFGSWLFFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPD-YPKGR 234
           ++SCPNY  E   W+ + +  +  PA  FA      +A  A+  H+ Y+K F + YP+ R
Sbjct: 186 YISCPNYFGECLQWIGYALAARSFPAIAFAFFIVCNLAPRAMSHHKWYQKMFGEQYPRDR 245

Query: 233 KA 228
            A
Sbjct: 246 HA 247


>Z71178-13|CAF31498.1|  342|Caenorhabditis elegans Hypothetical
           protein B0024.13b protein.
          Length = 342

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 413 NFVSCPNYTYEFGSWL-FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKG 237
           N VSCP++ +E   +L  F ++                    A+  H  Y K FP YPK 
Sbjct: 274 NLVSCPHFLFEICIYLSLFLVIPDAYVYRFIIMFVCINQTFAALITHSWYHKTFPKYPKS 333

Query: 236 RKA 228
           RKA
Sbjct: 334 RKA 336


>Z71178-11|CAA94885.2|  309|Caenorhabditis elegans Hypothetical
           protein B0024.13a protein.
          Length = 309

 Score = 34.3 bits (75), Expect = 0.056
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 413 NFVSCPNYTYEFGSWL-FFTIMTKCAPAGLFAAAGFYQMAVWAIGKHRNYKKEFPDYPKG 237
           N VSCP++ +E   +L  F ++                    A+  H  Y K FP YPK 
Sbjct: 241 NLVSCPHFLFEICIYLSLFLVIPDAYVYRFIIMFVCINQTFAALITHSWYHKTFPKYPKS 300

Query: 236 RKA 228
           RKA
Sbjct: 301 RKA 303


>Z70782-11|CAA94848.1|  487|Caenorhabditis elegans Hypothetical
           protein F57A8.7 protein.
          Length = 487

 Score = 24.6 bits (51), Expect(2) = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 30  LPSNMSSDTHQGTNQYLFDISKLSMSIF 113
           L S + +   QGT Q L+DIS  +  IF
Sbjct: 392 LYSKLLNPDSQGTQQSLYDISNTTARIF 419



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +3

Query: 231 FTAFGV--VWEFLLVVAMFT 284
           +T +G   VWEFL ++ +FT
Sbjct: 428 YTVYGPRRVWEFLCLLLLFT 447


>Z70781-9|CAA94837.1|  487|Caenorhabditis elegans Hypothetical
           protein F57A8.7 protein.
          Length = 487

 Score = 24.6 bits (51), Expect(2) = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 30  LPSNMSSDTHQGTNQYLFDISKLSMSIF 113
           L S + +   QGT Q L+DIS  +  IF
Sbjct: 392 LYSKLLNPDSQGTQQSLYDISNTTARIF 419



 Score = 22.2 bits (45), Expect(2) = 3.3
 Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = +3

Query: 231 FTAFGV--VWEFLLVVAMFT 284
           +T +G   VWEFL ++ +FT
Sbjct: 428 YTVYGPRRVWEFLCLLLLFT 447


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 380 FGSWLFFTIMTKCAPAGLFAA--AGF-YQMAVWAIGKHRNYKK 261
           FG+  FF    K     LF    +G  Y+   WA+GKHR   K
Sbjct: 131 FGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAK 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,712,038
Number of Sequences: 27780
Number of extensions: 276372
Number of successful extensions: 694
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)