Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A09
         (566 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit L23|...    42   5e-05
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    33   0.022
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    30   0.27 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.9  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    27   2.5  
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy...    26   3.4  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    26   3.4  
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ...    25   5.9  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   5.9  
SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    25   5.9  

>SPAC31A2.08 |mrp20||mitochondrial ribosomal protein subunit
           L23|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 161

 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 26/91 (28%), Positives = 45/91 (49%)
 Frame = -3

Query: 417 VFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINMGKFK 238
           V+ PN    L R    Q P    F   + + K+D+ +YL+ +Y + VV V+++I  GK  
Sbjct: 10  VYFPNITFTLCRGLNLQ-PKFAVFRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLF 68

Query: 237 KDVVKGYVIKEDDVKVAFVTLPKTMTFKYPD 145
           ++ + G V +    K   V + +   F YP+
Sbjct: 69  RNQL-GQVKRPQSEKRVIVEMEE--PFVYPN 96


>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -3

Query: 360 NIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINMGKFKKDVVK 223
           N + FH  ++  K+ I N ++K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAFVK 124


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.9 bits (64), Expect = 0.27
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 360 NIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINMGKFKKDVVK 223
           N + FH  ++  K+ I   + K+Y V  V + T I     KK  VK
Sbjct: 79  NTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAFVK 124


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = -2

Query: 535 HYLSAKYFNIVYYPLLNTSNFNNVHTVVPHLSKRKPTT*SIFAEFLDEISTT 380
           HY + KYF IV+  L+N SN      V P  + +K         +L EIS T
Sbjct: 702 HYDAHKYFPIVFDVLMNISNMAPHVKVFPFNTNQKRLIIHGCLLWLKEISDT 753


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 186 FVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKY 67
           F+T+ +T+   YPD+ +K      + ++ +  S   F KY
Sbjct: 418 FITVSRTLVPNYPDIVQKLGQTSIQLSRLISNSMDCFEKY 457


>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 735

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -3

Query: 177 LPKTMTFKYPDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRP 43
           +PK  T +  +  EK   EEEE  + L+   +   + +DH    P
Sbjct: 1   MPKNRTGRSREAREKKRKEEEEEIEELNSQIEALSETVDHFAELP 45


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = -3

Query: 186 FVTLPKTMTFKY---PDLFEKSINEEEEHAKSLDESKKNFRKYIDHNKSRPER 37
           ++TL K    KY     LFE  +++E+   +++ +    F   +DH+K R ER
Sbjct: 289 YITLDKGFPSKYIYSRSLFEYQLSDEDFRLQAILQLIIIFDFLLDHSKERIER 341


>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 150 PDLFEKSINEEEEHAKSLDESKKNF---RKY 67
           PDL E+S  +EE  + S  E K NF   RKY
Sbjct: 141 PDLKEESSTDEEMDSLSAAEEKPNFLQKRKY 171


>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = -3

Query: 447 IYQRGNPQLRVFLPNFWMKLVRPHPKQLP-NIVHFHCSMEMTKYDIXNYLEKIYEVPVVD 271
           +Y  G+ +L++    F    + P  K+L  NIV     +E+T  D+ NY   I +  + D
Sbjct: 58  LYGPGSEKLKIDQRTF----LTPSSKKLQINIVSSLHHLEITPSDVGNYDRVIMQELLKD 113

Query: 270 VRTKINMGKFKKDVVKGYVIKEDD--VKVAFVTLPKTM 163
           V     +    K + K  VI   D   + A   L +TM
Sbjct: 114 VAQSAQVDLQAKKIFKVVVINVADELTRDAQAALRRTM 151


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 384 RPHPKQLPNIVHFHCSMEMTKYDIXNYLEKIYEVPV 277
           RP  ++LP    ++ SM  T + +     +I++VPV
Sbjct: 107 RPFIRRLPEFKFWYSSMRATLFALVASFFRIFDVPV 142


>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 529 LSAKYFNIVYYPLLNTSNFNNVHTVVPHLS 440
           LS  +FN+ + PL   ++F+   T  PH S
Sbjct: 289 LSTHHFNLGFQPLSQQTSFSGSSTQNPHSS 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,981,050
Number of Sequences: 5004
Number of extensions: 36950
Number of successful extensions: 140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)