Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A09
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0070 + 13045122-13045715                                         35   0.052
05_07_0307 - 29111643-29112104,29112222-29113214                       29   2.0  
11_01_0701 - 5774234-5774404,5774456-5774456,5774558-5774763,577...    29   3.4  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    28   6.0  
07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    27   7.9  

>07_03_0070 + 13045122-13045715
          Length = 197

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
 Frame = -3

Query: 417 VFLPNFWMKLVRPHPKQLPNIVHFHCSM--EMTKYDIXNYLEKIYEVPVVDVRTKINMGK 244
           +   N  +KL+ P P  L ++  F        +K DI   LE +Y   V +VRT +NM +
Sbjct: 10  IHFANLPLKLMLP-PAPLSSVQEFAVKTVPSASKVDIRRCLESMYGFSVAEVRT-LNM-E 66

Query: 243 FKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKS--INEEEEHAKSLDESKK 82
            KK     ++  + D K A+VTL   +    PDLF     + E E  A +    +K
Sbjct: 67  GKKLRRGPFLAAKPDYKKAYVTLRAPLPVS-PDLFPIGLVLGERERKASAAAARRK 121


>05_07_0307 - 29111643-29112104,29112222-29113214
          Length = 484

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
 Frame = -3

Query: 435 GNPQLRVFLPNFWMKLVRP--HPKQLPNIVHF-HCSMEMTKYDIXNYLEKIYEVPVVDVR 265
           G  ++ VF  N+  +L +    P ++   +H  +C+ E  +    NY    Y V   ++ 
Sbjct: 349 GEERIIVFTTNYKERLDQALMRPGRMDMHIHMGYCTPEAFRILASNYHSIDYHVTYPEIE 408

Query: 264 TKINMGKFKKDVVKGYVIKEDDVKVAFVTLPKTMTFKYPDLFEKSINEEEEHAKSLDESK 85
             I         V   +++ DD+ VA + L + +  K  D  E    E ++  K  +E+K
Sbjct: 409 ELIKEVMVTPAEVAEALMRNDDIDVALLGLLELLKSKIKDASETKA-ESKDANKQTEENK 467


>11_01_0701 -
           5774234-5774404,5774456-5774456,5774558-5774763,
           5775157-5775303,5775423-5775628,5776391-5776580
          Length = 306

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = -3

Query: 210 KEDDVKVA-FVTLPKTMTFKYPDLFEKSINEEE---EHAKSLD--ESKKNFRKYIDHN 55
           KED+   A  +  P      YPDLFE+    E     H+ S++  + KK   +Y  HN
Sbjct: 42  KEDEETTADLLDAPPVFLIDYPDLFERGWGWERLFPYHSSSVEWPQFKKYLEEYSSHN 99


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 426 QLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDI 313
           +L VF P  W  ++  H ++  NI+     +E+   DI
Sbjct: 547 RLTVFYPTLWKTVIASHSQECENIIVLRKMLELRTGDI 584


>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/72 (23%), Positives = 30/72 (41%)
 Frame = -3

Query: 429 PQLRVFLPNFWMKLVRPHPKQLPNIVHFHCSMEMTKYDIXNYLEKIYEVPVVDVRTKINM 250
           P+ R  +      L R H K L  I H  CS+   +Y   +  ++I    V + R  +  
Sbjct: 657 PEFRPSMSEVVQDLTRMHEKGLLCIAHLICSVSTGEYTRVHKTDEIQSDFVKNRRFNVAP 716

Query: 249 GKFKKDVVKGYV 214
             F  ++  G++
Sbjct: 717 QWFSSEISMGFI 728


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,078,371
Number of Sequences: 37544
Number of extensions: 210460
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)