Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_pT_A07
(846 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F12.13c |fps1||geranyltranstransferase Fps1|Schizosaccharom... 100 3e-22
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 97 2e-21
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 26 5.8
SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyce... 26 7.7
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch... 26 7.7
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 26 7.7
>SPAC6F12.13c |fps1||geranyltranstransferase
Fps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 100 bits (239), Expect = 3e-22
Identities = 51/146 (34%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = -3
Query: 844 GWCVEMFQAYCIVXDDIMDGSSVXRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFXKTNF 665
GW VE+ Q++ ++ DDIMD S RG PCWY P VG A ND+ ++ S+++ K +F
Sbjct: 81 GWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVG-NIAINDAFMVESAIYFLLKKHF 139
Query: 664 RTNPNYIKMFELFNETLWRTSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYN 488
R Y+ + ELF++ ++T +GQ LD +T D S F+L + +
Sbjct: 140 RQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFY 199
Query: 487 LPVSLGLLLAENVDEKNL*ICSRHLL 410
LPV+L + LA +NL C++ +L
Sbjct: 200 LPVALAMHLAGVATPENL-KCAQDIL 224
Score = 96.7 bits (230), Expect = 4e-21
Identities = 40/107 (37%), Positives = 68/107 (63%)
Frame = -1
Query: 432 KSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEAQRTV 253
K AQDI + +G FQ+QDD++DC+GD TGK+GTDI + KC+W+ AL +CT QR +
Sbjct: 218 KCAQDILIILGKYFQVQDDYLDCYGDPTVTGKIGTDILDNKCSWIINLALAKCTPEQRVI 277
Query: 252 FKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENI 112
YG + +R+K ++E+L++ +++ E++ I + I+ +
Sbjct: 278 LDDNYGRKDSESEKRVKAVFEELNIRGEFENYEESEVSEIKKLIDGV 324
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 97.5 bits (232), Expect = 2e-21
Identities = 47/132 (35%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Frame = -1
Query: 444 KKIYKSAQDICLEIGTMFQIQDDFIDCFGDEIKTGKVGTDIQERKCTWLAVQALQRCTEA 265
+K Y + + +G FQ+QDD++DCFGD GKVG DIQ+ KCTWL A + +
Sbjct: 218 QKAYDTTIKLSKLLGYYFQVQDDYLDCFGDYTVLGKVGMDIQDNKCTWLVCYAEKFASAD 277
Query: 264 QRTVFKACYGSSEPAHVERIKRLYEDLHLPQIYKHQEKAMYDNIIRQIENIPIEAA--RV 91
Q + +A YG + ++ IK+LY +L +P++Y E M D+I ++I+ I +
Sbjct: 278 QLNLLRAHYGKAGSENIAVIKQLYHELQIPELYHKFEDDMVDSISKEIDLIDESTGLKKC 337
Query: 90 LFKKLLDITYNR 55
+F K + Y R
Sbjct: 338 IFTKFFQLIYKR 349
Score = 73.3 bits (172), Expect = 4e-14
Identities = 41/136 (30%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Frame = -3
Query: 844 GWCVEMFQAYCIVXDDIMDGSSVXRGMPCWYRRPEVGITCAFNDSLLIHSSLFEFXKTNF 665
GW +E+ Q ++ DDIMD S RG+ CWY VG+ A N+S L+ + + + F
Sbjct: 86 GWLIEILQGCFLMADDIMDQSIKRRGLDCWYL--VVGVRRAINESQLLEACIPLLIRKYF 143
Query: 664 RTNPNYIKMFELFNETLWRTSMGQHLDHVTG-NRKTDYSSFTLDRXXXXXXXXXXXXXYN 488
R P Y+ + + F E + T +GQ D ++ + + SF L + +
Sbjct: 144 RNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFY 203
Query: 487 LPVSLGLLLAENVDEK 440
LP+ LLL+ N ++K
Sbjct: 204 LPIKCALLLSRNSNQK 219
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 5.8
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Frame = -1
Query: 405 IGTMFQIQDDFIDCFGDEIKTGK-VGTDIQERKCTWLAVQALQRCTEAQRTVFKACYGSS 229
IGT FQ+ DD +D + GK G D++ T + A ++ E + +
Sbjct: 262 IGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPELGAMIVNR---FN 318
Query: 228 EPAHVERIKRLYE 190
P+ ++R + L E
Sbjct: 319 HPSDIQRARSLVE 331
>SPBC15D4.09c |||cystathionine gamma-synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 610
Score = 25.8 bits (54), Expect = 7.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = -1
Query: 216 VERIKRLYEDLHLPQIYKHQEKAMYDNIIRQ 124
++R ++ E++H+PQ+Y + Y I +Q
Sbjct: 130 IDRNRKYTEEIHIPQVYSVLFPSKYFGIAKQ 160
>SPAC18G6.07c |mra1||ribosome biogenesis protein
Mra1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 7.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 423 QDICLEIGTMFQIQDDFIDCFGDE 352
Q +C+ IG M DDF D + DE
Sbjct: 307 QSVCIAIGAMAHGPDDFSDGWVDE 330
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.8 bits (54), Expect = 7.7
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +1
Query: 1 NSGNKGFV*NILYYCL-MLPIVRNIQQLFKE--NAGGLYWYIFNLS 129
N G G V + + C+ ++P+ ++ +L +GGLY++IF L+
Sbjct: 76 NCGGGGMVWSWIIGCICLIPVSISLGELASSMPTSGGLYFWIFTLA 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,134
Number of Sequences: 5004
Number of extensions: 72898
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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