Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A05
         (493 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   2.7  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   3.5  

>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 125 PKAGIHPRLAT*VTA*VTPSGPMYAN-SPRTS 217
           PKA + PR+   +T   + + P+YAN SP++S
Sbjct: 664 PKASLSPRVHKSMTYSPSEASPLYANKSPKSS 695


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = -2

Query: 288 ETSNGIKAQETGQLKNIGTENEALEVRGEFAYIGPDGVTYAVTYVAKRGWIPAFGTSHSQ 109
           E   G + +E  ++ N  +ENE  +  G+ +       ++    + +R  + A GTS S 
Sbjct: 359 EEMEGEEEEEEEEVPNYESENELEDKVGDLSLSLGVASSFVDEMLRERNNLSAEGTSASP 418

Query: 108 GLSQPNRPQHLVQ 70
            L + +   ++VQ
Sbjct: 419 SLDKKSESTNIVQ 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,571,223
Number of Sequences: 5004
Number of extensions: 25347
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)