Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_pT_A04
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    33   0.039
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    27   2.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   4.4  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    25   7.8  

>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 33.1 bits (72), Expect = 0.039
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 45  TMKLDTLKISVIYYLTKNPTFDLLTKNHLKLIRLQTNSCH*SFKKSRKNKTIMDIKRYNG 224
           T  L ++K+ +   L  +P F  + +N L+ +      C   FK+S +NK +   + YN 
Sbjct: 377 TSCLPSIKVILARVLESSPAFGFIERNELEQLSYHFRICEKFFKESSENKMLNLFEDYNE 436

Query: 225 Y 227
           +
Sbjct: 437 F 437


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 111 LLTKNHLKLIRLQTNSCH*SFKKSRKNKTIMDIKRYNGYKNKILFFENRL 260
           +  +N  K+ R   + CH +FK  R  + +   K Y     K + ++  L
Sbjct: 20  MFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHGKEMVYDTAL 69


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 33  TYISTMKLDTLKISVIYYLTKNPTFDLLTKNHLKLIR 143
           TYIST     L  SVI+ L  +P  +L  +N   +++
Sbjct: 249 TYISTYSYSKLAQSVIFNLISSPVSNLAFENVFNILQ 285


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 590 GIYINFLVC*FLFGFFNIN 534
           GI ++F  C F+FG+FN+N
Sbjct: 14  GILLSFS-CKFVFGYFNVN 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,530,593
Number of Sequences: 5004
Number of extensions: 48512
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)