Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P24
         (868 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8SYQ4 Cluster: RE42475p; n=9; Endopterygota|Rep: RE424...   179   1e-43
UniRef50_Q0GET3 Cluster: PHA synthase II; n=1; uncultured Pseudo...    36   1.3  
UniRef50_A7DJG0 Cluster: UvrD-like DNA helicase, C terminal; n=2...    35   3.1  
UniRef50_UPI0000DB7C15 Cluster: PREDICTED: similar to cysteine-r...    34   5.4  
UniRef50_UPI0000ECBADC Cluster: KIAA0284 (KIAA0284), mRNA; n=3; ...    34   5.4  

>UniRef50_Q8SYQ4 Cluster: RE42475p; n=9; Endopterygota|Rep: RE42475p
           - Drosophila melanogaster (Fruit fly)
          Length = 148

 Score =  179 bits (435), Expect = 1e-43
 Identities = 75/99 (75%), Positives = 85/99 (85%)
 Frame = +1

Query: 184 KTFRRLIPADVLRDFPGMCFASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVE 363
           + F+RLIPADVLRDFPGMCFASTRC TVEPG +W+L+PFCGRSTCV +E+   +L ELVE
Sbjct: 34  RIFKRLIPADVLRDFPGMCFASTRCATVEPGKSWDLTPFCGRSTCVQNEENDAKLFELVE 93

Query: 364 DCGPLPLTNPKCQLDTEKTNKTAPFPGCCPIFTCEEGAK 480
           DCGPLPL N KC+LDTEKTNKTA FP CCPIFTC+ G K
Sbjct: 94  DCGPLPLANDKCKLDTEKTNKTASFPYCCPIFTCDPGVK 132


>UniRef50_Q0GET3 Cluster: PHA synthase II; n=1; uncultured
           Pseudomonas sp.|Rep: PHA synthase II - uncultured
           Pseudomonas sp
          Length = 147

 Score = 35.9 bits (79), Expect = 1.3
 Identities = 28/74 (37%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
 Frame = +3

Query: 252 PLHHRRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLR-------TSATHQPQVPIRY 410
           P +HRR R         RP H R  R PA QA  A RR R            QP+ P+R 
Sbjct: 44  PRNHRRPRGQPDGRLCRRPDHRRAARPPASQAPVAPRRQRQLSGEPARQPDRQPRHPVRR 103

Query: 411 RKDQ*DRSLPWLLP 452
           R +   R  P LLP
Sbjct: 104 RANPGSRQAP-LLP 116


>UniRef50_A7DJG0 Cluster: UvrD-like DNA helicase, C terminal; n=2;
           Methylobacterium extorquens PA1|Rep: UvrD-like DNA
           helicase, C terminal - Methylobacterium extorquens PA1
          Length = 1344

 Score = 34.7 bits (76), Expect = 3.1
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 252 PLHHRRARQHLGAVSVLRPQHLRRQRGPAPQA---AGACRRLRTSA 380
           PLH RR R  L  +S +R + L+R R P P+A   AG  RR R +A
Sbjct: 151 PLHDRRGRLPLAPLSAIRAR-LQRVRSPRPRARMVAGRARRSRVNA 195


>UniRef50_UPI0000DB7C15 Cluster: PREDICTED: similar to cysteine-rich
           motor neuron 1, partial; n=1; Apis mellifera|Rep:
           PREDICTED: similar to cysteine-rich motor neuron 1,
           partial - Apis mellifera
          Length = 440

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
 Frame = +1

Query: 229 PGMCFASTRCITVEPGNTWELSPFCGRSTCVVS---EDQP-PRLLELVED--CGPLPLTN 390
           P  C +  R I V+P +       C R  C+ S   E +P P    L ED  C   P   
Sbjct: 26  PVECESGQRRIQVKPADPETPGSCCARYDCLPSDSRESEPCPENSVLTEDGKCECAPCPR 85

Query: 391 PKCQLDTEKTNKTAPF----PG-CCPIFTCE 468
           P CQ         A      PG CCP++ C+
Sbjct: 86  PTCQSGHRPVQVRAALDRETPGSCCPLYECK 116


>UniRef50_UPI0000ECBADC Cluster: KIAA0284 (KIAA0284), mRNA; n=3;
            Amniota|Rep: KIAA0284 (KIAA0284), mRNA - Gallus gallus
          Length = 1595

 Score = 33.9 bits (74), Expect = 5.4
 Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = +3

Query: 336  APQAAGACRRLRTSATHQPQVPIRYRKDQ*DRSLPWL-LPDLYLRGGRQAGVP*APHPSP 512
            AP+   A +R +   +   +  + +  D+   SLP+L +PD  +     +     P P+P
Sbjct: 1038 APRCVEATKRFQMKRSAGTRGSLDFTDDERSSSLPYLPVPDAVVSDHEHS----VPRPAP 1093

Query: 513  RRQESGGEA*SLKSKTTKSIHNPQRAMTLTKS 608
            RR+     A    SKTT ++   Q+ +T + S
Sbjct: 1094 RRKPFTQAAKEDHSKTTANVQKIQQVLTRSNS 1125


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 716,087,809
Number of Sequences: 1657284
Number of extensions: 12931484
Number of successful extensions: 34311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 33010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34274
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)