Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P24
         (868 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484           29   3.6  
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    29   4.8  
01_07_0298 - 42586007-42589742,42590167-42590280,42590295-425904...    29   4.8  
07_03_1298 - 25592788-25592890,25593126-25593229,25593747-255938...    28   8.4  
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707...    28   8.4  

>04_01_0589 + 7704262-7704429,7704718-7705540,7705844-7706484
          Length = 543

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +1

Query: 286 ELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNP 393
           ++SP  GRST +VS    PR+  +    G  PL NP
Sbjct: 473 QVSPAPGRST-IVSSSNAPRIAPIRRSIGKSPLGNP 507


>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = +3

Query: 318 RRQRGPAPQAAGACRR--LRTSATHQPQVPIR 407
           RR+R PAP++    RR  ++T+++H+ + P+R
Sbjct: 245 RRERSPAPRSRSPRRRSPVKTTSSHRERSPVR 276


>01_07_0298 -
           42586007-42589742,42590167-42590280,42590295-42590437,
           42591174-42591347
          Length = 1388

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 27/78 (34%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
 Frame = +3

Query: 264 RRARQHLGAVSVLRPQHLRRQRGPAPQAAGACRRLRTSATHQ---PQVPIRYRKDQ*DRS 434
           RRARQ   +  +L P   RRQR        A RR  T AT      +V  R+R +Q   S
Sbjct: 88  RRARQRRQSQRLLPPSFSRRQR----TVTAAARRTATGATQHGDGGRVGARWRAEQGRGS 143

Query: 435 LPWLLPDLYLR-GGRQAG 485
                 D+Y    GR+ G
Sbjct: 144 WGGTFTDIYAEVPGRREG 161


>07_03_1298 -
           25592788-25592890,25593126-25593229,25593747-25593808,
           25593957-25594065,25594215-25594355,25594707-25594769,
           25594974-25595084,25596140-25596457
          Length = 336

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 684 VTEKKIVNQCYRIYERKKKKKTREILISLMSWRVVG 577
           V+  ++V  C R+  +KKKKK+  +     +W V+G
Sbjct: 27  VSRSRVVEGCSRVSLKKKKKKSFYVFAIDGAWAVLG 62


>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
            27771407-27771773,27772104-27772217,27772307-27772403,
            27772968-27773088,27773168-27773252,27773349-27773498,
            27773630-27773746,27773819-27773905,27773981-27774049,
            27774125-27774181,27774266-27774349,27774477-27774513,
            27774721-27774869,27776053-27776538,27776743-27776886,
            27776961-27777509,27778332-27778526,27779226-27779310,
            27779570-27779670,27779689-27780360,27781101-27781433,
            27781957-27782038,27782258-27782334,27782713-27782817,
            27783810-27783944,27784437-27785159,27785882-27786663,
            27787480-27789187
          Length = 2891

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +1

Query: 247  STRCITVEPGNTWELSPFCGRSTCV-VSEDQPPRLLELVEDCGPLPLTNPKCQLDTE 414
            ST  +   P  T  LSPFCGR +C+ +S D    L+      G    +N KC+  TE
Sbjct: 2739 STFTVNGLPIATTVLSPFCGRVSCIEISTDGHFALM------GTCSSSNYKCEDSTE 2789


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,096,192
Number of Sequences: 37544
Number of extensions: 352921
Number of successful extensions: 982
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)