Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P24
(868 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 31 1.2
SB_48822| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.8
SB_54081| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_4144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_48072| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0) 28 8.6
SB_47119| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_11272| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_12129| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 31.1 bits (67), Expect = 1.2
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +3
Query: 219 KRFPRNVLRVHPLHHRRAR----QHLGAVSVLRPQHLRRQRGPAPQAAGACRRLRTSATH 386
+ F R+ R P H RR+R +H + S P+H RR R P ++ RR +
Sbjct: 61 RSFSRSKSRTPPRHRRRSRSPNKKHSRSKSRTPPRHRRRSRSPRRESIDRKRRSSYESPS 120
Query: 387 QPQVPIRYRK 416
P RK
Sbjct: 121 PQPFPSPVRK 130
>SB_48822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 51
Score = 29.9 bits (64), Expect = 2.8
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 705 VILCNPNVTEKKIVNQCYRIYERKKKKKTRE 613
+I NP TE + Y YE+KK K+TRE
Sbjct: 12 IIAVNPTWTEILLNRMKYSKYEKKKNKQTRE 42
>SB_54081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +1
Query: 244 ASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNPKCQLDTEKTN 423
A T CI E N PF R V+ E L + D P P + P DT+++
Sbjct: 61 AFTVCIHTENQNQVSFYPFVLREISVLIELTLGHLRYRLTDVPPQPNSQPDSVFDTDRSA 120
Query: 424 KTAP 435
K P
Sbjct: 121 KERP 124
>SB_4144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 29.1 bits (62), Expect = 4.9
Identities = 19/61 (31%), Positives = 25/61 (40%)
Frame = +1
Query: 244 ASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNPKCQLDTEKTN 423
A T CI E N PFC V+ E L + D P P + P DT+++
Sbjct: 48 AFTVCIHTENQNQVSFYPFCLHEISVLIELTLGHLRYRLTDVPPQPNSQPDSVFDTDRSC 107
Query: 424 K 426
K
Sbjct: 108 K 108
>SB_51128| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1880
Score = 28.7 bits (61), Expect = 6.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +1
Query: 325 SEDQPPRLLELVEDCGPLPLTNPKCQLDTEKTNKTAPFPGCCPIFTC 465
S+DQ P+ L+L N KC+ T+ AP PG CP C
Sbjct: 1442 SKDQAPKTLDLPLGGDRNSSKNGKCKC----THDAAPLPGSCPKAFC 1484
>SB_48072| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +1
Query: 244 ASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNPKCQLDTEKTN 423
A T CI E N PF V+ E L + D P P + P DT+++
Sbjct: 61 AFTVCIHTENQNQVSFYPFVLHEISVLIELTLGHLRYRLTDVPPQPYSQPDSVFDTDRSA 120
Query: 424 KTAP 435
K P
Sbjct: 121 KERP 124
>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
Length = 1291
Score = 28.3 bits (60), Expect = 8.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = +3
Query: 213 RFKRFPRNVLRVHPLHHRRARQHLGAVSVLRPQH 314
R F VLR HP H+R R H VLR H
Sbjct: 1044 RHHPFYYRVLRHHPFHYRVLRHHPFHYRVLRHHH 1077
>SB_47119| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +1
Query: 244 ASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNPKCQLDTEKTN 423
A T CI E N PF V+ E L + D P P + P DT+++
Sbjct: 61 AFTVCIHTENQNQVSFYPFVLHEISVLIELTLGHLRYRLTDVPPQPNSQPDSVFDTDRST 120
Query: 424 KTAP 435
K P
Sbjct: 121 KERP 124
>SB_11272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 124
Score = 28.3 bits (60), Expect = 8.6
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +1
Query: 214 VLRDFPGMCFASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNP 393
+L+ M A T CI E N PF V+ E L + D P P + P
Sbjct: 51 LLKTKGSMGHAFTVCIHTENQNQVSFYPFVLHEISVLIELTLGHLRYRLTDVPPQPNSQP 110
Query: 394 KCQLDTEKTNKTAP 435
DT+++ K P
Sbjct: 111 DSVFDTDRSAKERP 124
>SB_12129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 111
Score = 28.3 bits (60), Expect = 8.6
Identities = 19/64 (29%), Positives = 25/64 (39%)
Frame = +1
Query: 244 ASTRCITVEPGNTWELSPFCGRSTCVVSEDQPPRLLELVEDCGPLPLTNPKCQLDTEKTN 423
A T CI E N PF V+ E L + D P P + P DT+++
Sbjct: 48 AFTVCIHTENQNQVSFYPFVPHEISVLIELTLGHLRYRLTDVPPQPNSQPDSVFDTDRSA 107
Query: 424 KTAP 435
K P
Sbjct: 108 KERP 111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,910,986
Number of Sequences: 59808
Number of extensions: 400368
Number of successful extensions: 1783
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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