Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P23
(503 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49021| Best HMM Match : WAP (HMM E-Value=7.2) 32 0.23
SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0) 31 0.54
SB_14885| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1) 29 2.2
SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24) 29 2.2
SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31) 29 2.9
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42) 27 6.6
SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09) 27 8.8
>SB_49021| Best HMM Match : WAP (HMM E-Value=7.2)
Length = 158
Score = 32.3 bits (70), Expect = 0.23
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 35 CKSLCCY--SPLR*SWNAVTLSSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMY-- 202
C+ L CY +P +W L + G WS C ++CS R+ + CL++
Sbjct: 41 CRKLKCYDINPYVINWIVSFLGNRKKGCGGWSVNEVCRDRQRCSSRD---CVGTCLVFNY 97
Query: 203 --LPYSGGPFR 229
Y G P++
Sbjct: 98 GERHYPGQPYK 108
>SB_44732| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 675
Score = 31.1 bits (67), Expect = 0.54
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -2
Query: 253 RSCRRPECPEWTSRIWKVHEAS*NGGFQLSYGTFSS 146
R C+ P CPEWT W + GG T SS
Sbjct: 254 RKCQLPACPEWTVGKWSECSRTCGGGISARTVTCSS 289
>SB_14885| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +3
Query: 135 RAVQLENVP*--ES*KPPFQLAS--CTFHIREVHSGHSGLR 245
R V ENVP ++ KPPF+ + CT +R G+SGL+
Sbjct: 39 REVAKENVPLPNKAEKPPFESGTFTCTLRMRGARGGYSGLK 79
>SB_40691| Best HMM Match : Peptidase_C27 (HMM E-Value=1.1)
Length = 406
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Frame = -2
Query: 208 WKVHEAS*NGGFQLSYGTFSSCTARHGGRPRAY*RWCRRKCDRI------PRSPQ-RRVA 50
+KV+ + GG L FSSCT+ +P Y KC + P SP R+V+
Sbjct: 224 FKVYRKNLTGGVGLEIKVFSSCTSILNSKPNPYREKTVEKCCKTTRGQVDPSSPDARKVS 283
Query: 49 TQRFA 35
+R A
Sbjct: 284 LRRVA 288
>SB_3851| Best HMM Match : TSP_1 (HMM E-Value=3.7e-24)
Length = 429
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 247 CRRPECPEWTSRIWKVHEAS*NGGFQLSYGTFSSCTARHG 128
C + ECP WT+ W ++ G + F SC R G
Sbjct: 49 CEKGECPRWTAGAWSECSSTCGSGVRT---RFVSCKPRDG 85
>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2214
Score = 28.7 bits (61), Expect = 2.9
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 169 LSYGTFSSCT-ARHGGRPRAY*RWCRRKCDRIPRSPQRRVATQRFATSSWQMA 14
LSYG +S A H R R RW RR+ + P S +++ Q+ W+ A
Sbjct: 1032 LSYGVYSPVQKAYHLSRRR---RWVRRRDLKHPESTKKQEHFQKLLLEGWEYA 1081
>SB_10027| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.31)
Length = 635
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 220 SIQGILAFDKTYSTASANITQGGIGYNFVNLRMKSERGSKIHYDVYIFA 366
S + + ++K Y TA A+ T + NF+ L K R DVY+ A
Sbjct: 451 SAEEVRKYEKRYETALASRTTDALAENFLKLTTKLWRVCHPRADVYLKA 499
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.9 bits (59), Expect = 5.0
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = -3
Query: 327 LALHAEIDEVIADSALGDVRRSGAIGLVEGQNALNGPPEYGRYMRQAEMEVFNSLTEHFR 148
+ L +E+ GD++ SGAI + G N N P+ G + E+ VF +
Sbjct: 2723 VVLTSEVSNDNVSGPAGDLKDSGAIIVAVGYNDKNNVPQLGEITGKPEL-VFIKGIDDLS 2781
Query: 147 AVLHVMVVDQGPIDAGADESVTAFHDHRSGE 55
H + G + A D+ T+F G+
Sbjct: 2782 GFAHAL---SGELSAVVDK-CTSFPCQNGGK 2808
>SB_45543| Best HMM Match : PP2C (HMM E-Value=6.00036e-42)
Length = 375
Score = 27.5 bits (58), Expect = 6.6
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 142 YSSKMFRKRVENLHFSLPHVPSIFG 216
Y+ K R+++E+ H +PH S+FG
Sbjct: 44 YAIKNTRRKMEDKHVIMPHFNSLFG 68
>SB_7689| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 612
Score = 27.5 bits (58), Expect = 6.6
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = +2
Query: 92 SSAPASIGPWSTTMTCSTARKCSVRELKTSISACLMYLPYSGGPFRAFWPSTRPIAPLLR 271
S P + P+S T A C + L T++ AC + LPY G S P PLLR
Sbjct: 517 SLRPFKLAPFSPLTTALQA--CYLLFLTTTLQACPLLLPYYGP------SSLLPSLPLLR 568
>SB_10010| Best HMM Match : HLH (HMM E-Value=8.5e-09)
Length = 227
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 152 KCSVRELKTSISACLMYLPYSGGP 223
K ++EL TSI+ C LP +G P
Sbjct: 97 KKEIQELNTSINTCQSQLPATGAP 120
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,640
Number of Sequences: 59808
Number of extensions: 278682
Number of successful extensions: 750
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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