Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P28_F_P21
         (886 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   3.2  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    23   3.2  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   3.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   7.4  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.7  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 711 GGNSFLHSTHVSSQSRLISYSRWDTTKQSR 622
           GGNS  +S+  +  + L  +SRW     +R
Sbjct: 346 GGNSASNSSGDAQSTSLRPFSRWSLCNSAR 375


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 82  ETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMS 198
           +TLG   N I EP+ +     T K ++  A AP   D++
Sbjct: 380 QTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLT 418


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -1

Query: 826 RKYSGSIQVSQKWWLEQDQSSHQLVHK*PA 737
           RKY  ++    ++WL++   +++L+   PA
Sbjct: 262 RKYDENVDYQVRYWLQKGAPNNKLILGIPA 291



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 541 YFRDQEGQDVLLFIDNIFRF 600
           YFRD +G+  + FID   +F
Sbjct: 30  YFRDGQGKFDVNFIDPALQF 49


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 230 KSSICSLLMPKVERLGCLAELVWAKLY*LWN*STMLP 340
           + S+ +LL    E + C++E VW+KL    N    LP
Sbjct: 97  QQSVTALLDTGSE-VSCISEEVWSKLIETGNKPPTLP 132


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 691 MQERITTTKKGSITSVQAIYVPADDLTDPAP 783
           +Q R +T+    +   Q   +P+D  T P P
Sbjct: 52  LQVRPSTSAAADVDGWQVTPLPSDGTTSPEP 82


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,956
Number of Sequences: 336
Number of extensions: 5361
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)