Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P21
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 419 e-118
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 76 8e-15
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 74 2e-14
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 72 1e-13
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.67
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.5
SPBC1709.09 |||mitochondrial translation termination factor|Schi... 28 2.0
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 28 2.0
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 27 2.7
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 2.7
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb... 27 3.6
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 4.7
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 27 4.7
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 26 8.2
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 26 8.2
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 419 bits (1033), Expect = e-118
Identities = 210/268 (78%), Positives = 223/268 (83%)
Frame = +1
Query: 1 AMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAP 180
AMDGTEGLVRG V+D+GSPI IPVG TLGRI+NVIGEP+DERGPI K + IHA+AP
Sbjct: 109 AMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAP 168
Query: 181 EFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYS 360
F + S EIL TGIKVVDLLAPYA TV I ELINN+AKAHGGYS
Sbjct: 169 SFEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYS 228
Query: 361 VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAE 540
VF GVGERTREGNDLY EM E+GVI L+ + SK ALV+GQMNEPPGARARVALTGLTVAE
Sbjct: 229 VFTGVGERTREGNDLYREMQETGVIKLEGE-SKAALVFGQMNEPPGARARVALTGLTVAE 287
Query: 541 YFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKK 720
YFRD EGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG MQERITTTKK
Sbjct: 288 YFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGAMQERITTTKK 347
Query: 721 GSITSVQAIYVPADDLTDPAPATTFGSL 804
GSITSVQA+YVPADDLTDPAPATTF L
Sbjct: 348 GSITSVQAVYVPADDLTDPAPATTFAHL 375
Score = 34.7 bits (76), Expect = 0.018
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +2
Query: 806 DATTVLSKAIAELGIYPXV 862
DATTVLS++I+ELGIYP V
Sbjct: 376 DATTVLSRSISELGIYPAV 394
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 75.8 bits (178), Expect = 8e-15
Identities = 61/225 (27%), Positives = 102/225 (45%), Gaps = 10/225 (4%)
Frame = +1
Query: 154 TAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINN 333
T + A P +++ Q +L TG +V+D L P TV+ L
Sbjct: 216 TWPVRAARPVADNLTANQPLL-TGQRVLDALYPCVQGGTTAIPGAFGCGKTVISQSLSKY 274
Query: 334 VAKAHGGYSVFAGVGERTREGNDLYHEMIESGV-ISLKDKT--SKVALVYGQMNEPPGAR 504
++ V+ G GER E ++ + E + I+ K + + LV N P AR
Sbjct: 275 ---SNSDLIVYVGCGERGNEMAEVLMDFPELTIDINGKPEPIMKRTTLVANTSNMPVAAR 331
Query: 505 ARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM 684
TG+T+AEY+RDQ G++V + D+ R+ +A E+S L +P+ GY L +
Sbjct: 332 EASIYTGITLAEYYRDQ-GKNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGAKL 390
Query: 685 GTMQERI-------TTTKKGSITSVQAIYVPADDLTDPAPATTFG 798
+ ER + ++G+++ V A+ P D +DP + T G
Sbjct: 391 ASFYERAGRARCLGSPDREGTVSIVGAVSPPGGDFSDPVTSATLG 435
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 13 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 129
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 74.1 bits (174), Expect = 2e-14
Identities = 70/277 (25%), Positives = 111/277 (40%), Gaps = 15/277 (5%)
Frame = +1
Query: 7 DGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 183
+GT G+ VR + +G +RIPV + LGR+ N G PID+ + + I+
Sbjct: 77 EGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPIN 136
Query: 184 FVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIME------LINNVAK- 342
+E++ TGI +D L A + + L+ K
Sbjct: 137 PYARIYPEEMIQTGISSIDGLNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPTKD 196
Query: 343 AHGGYS-----VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARA 507
H G+ VFA +G + E+G +V L N+P R
Sbjct: 197 VHDGHEDNFSIVFAAMGVNLETARFFQRDFEENGSFE------RVTLFLNLANDPTIERI 250
Query: 508 RVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 687
L+ +E+ Q + VL + ++ + A EVSA +P GY + TD+
Sbjct: 251 ITPRLALSASEFLAYQTEKHVLTILTDMTSYADALREVSAAREEVPGRRGYPGYMYTDLS 310
Query: 688 TMQERI--TTTKKGSITSVQAIYVPADDLTDPAPATT 792
T+ ER + GSIT + + +P DD+T P P T
Sbjct: 311 TIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLT 347
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 72.1 bits (169), Expect = 1e-13
Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 12/270 (4%)
Frame = +1
Query: 10 GTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEF 186
G + LVR G+ V + + +PVG LGR+++ +G PID +GPI T + + +AP
Sbjct: 105 GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTERRRVQLKAPGI 164
Query: 187 VDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGG---- 354
+ + E + TG+K +D + P T + ++ I N + +
Sbjct: 165 LPRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAIALDTILNHKRWNNSSDES 224
Query: 355 ---YSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVALTG 525
Y V+ VG++ L ++ E+ D +V +E + +G
Sbjct: 225 KKLYCVYVAVGQKRSTVAQLVQKLEEN------DSLKYSIIVAATASESAPLQYLAPFSG 278
Query: 526 LTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI 705
+ E+FRD G+ L+ D++ + A ++S LL R P Y + + ER
Sbjct: 279 CAMGEWFRD-NGKHGLVVYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERA 337
Query: 706 TTTKK----GSITSVQAIYVPADDLTDPAP 783
GS+T++ I D++ P
Sbjct: 338 AKMSPKHGGGSLTALPVIETQGGDVSAYIP 367
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.5 bits (63), Expect = 0.67
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -3
Query: 227 IPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPE 48
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 47 SSTGCPRTKPSVP 9
+ST C T S+P
Sbjct: 281 TSTSC-TTSTSIP 292
>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 265
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 696 LHSTHVSSQSRLISYSRWDTTKQSRHF*SSLSETENV-VNEEQYILSFLITEI 541
LH + SS + Y W + + HF +++E N + ++Q+ SF++ +
Sbjct: 198 LHISFASSLTNEDEYQNWVSQDRESHFFKTMNEIINTKIQKDQFSESFIVDSL 250
>SPBC1709.09 |||mitochondrial translation termination
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 244
Score = 27.9 bits (59), Expect = 2.0
Identities = 8/31 (25%), Positives = 19/31 (61%)
Frame = +1
Query: 694 QERITTTKKGSITSVQAIYVPADDLTDPAPA 786
QE + +G+ T ++A+++P+ + P P+
Sbjct: 78 QEAVVLPSQGNFTQLEALFIPSKSIKAPTPS 108
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = -2
Query: 639 TTKQSRHF*SSLSETENVVNEEQYILSFLITEIFSNGETSKGHTSTGTR 493
TTK + SE N EEQY+ LI I NG++ T TGTR
Sbjct: 311 TTKPEPPVPFTSSEYRNT-EEEQYLN--LIRYILENGQSRPDRTGTGTR 356
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.5 bits (58), Expect = 2.7
Identities = 7/23 (30%), Positives = 18/23 (78%)
Frame = -1
Query: 478 DHILELPWMFCLLEKSHQIQSSR 410
D ++++ W +C+L++ H I+++R
Sbjct: 1481 DELVKIDWNYCVLDEGHVIKNAR 1503
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 137 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 3
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 120
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -1
Query: 880 VESRGSHXWVDTQFSNGFRKYSGSIQVSQKWWLEQDQS 767
+ S+ +H W DT+ S+G K S+ S K++ D+S
Sbjct: 55 IPSKNAHPWEDTKSSSG--KSDESLDYSYKYYPRGDRS 90
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 4.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 612 SSLSETENVVNEEQYILSFLITEIF 538
+ L N +NEE Y+++ L TEIF
Sbjct: 705 NELKNESNKINEEYYLMNELNTEIF 729
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 883 DVESRGSHXWVDTQFSNGFRKY 818
D+E+RG+H V T N F+ Y
Sbjct: 40 DIEARGTHFLVTTSVGNTFQTY 61
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 8.2
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 16 EGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAA-IHAEAPEFVD 192
EG+V+ L++ P+ IPV + N IGE +R P K A H + V+
Sbjct: 28 EGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE---QRCPFEHKKVVARYHRAGAKHVE 84
Query: 193 MSVQQEILVTGIKVVDLLAPYA 258
++ E + G KV + L P+A
Sbjct: 85 DAI--EAALRGKKVWESL-PFA 103
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.8 bits (54), Expect = 8.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -2
Query: 762 ISWYINSLHRCDGTFLGG 709
++WY++SLHR G + G
Sbjct: 71 LTWYLSSLHRITGCVVAG 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,867,810
Number of Sequences: 5004
Number of extensions: 83552
Number of successful extensions: 267
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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