BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P28_F_P21
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 84 1e-16
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 73 4e-13
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 72 7e-13
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 71 2e-12
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145... 31 1.6
11_06_0693 - 26334574-26336121 30 2.1
02_05_1214 + 34976814-34979813 30 2.1
09_04_0159 + 15213752-15214028,15214158-15214399 30 2.8
09_02_0465 - 9594866-9595672,9596036-9597496 29 3.8
07_03_0251 + 15831712-15832127,15832203-15832344,15832692-158330... 29 3.8
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750... 29 3.8
01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549... 29 3.8
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 29 5.0
12_02_0233 - 16023062-16023253,16023528-16023609,16023699-160238... 29 5.0
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 29 5.0
05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659... 29 6.6
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 29 6.6
10_08_0685 - 19875801-19875980,19876074-19876277,19876392-198767... 28 8.7
07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323 28 8.7
07_01_0702 + 5288588-5288889,5289257-5289407,5289543-5289725,529... 28 8.7
06_02_0176 + 12637287-12637376,12638108-12638280,12638631-126387... 28 8.7
01_06_0038 - 25819433-25820344 28 8.7
01_05_0159 + 18716055-18716272,18716900-18718529,18718622-187186... 28 8.7
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 84.2 bits (199), Expect = 1e-16
Identities = 72/279 (25%), Positives = 117/279 (41%), Gaps = 17/279 (6%)
Frame = +1
Query: 7 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPE 183
+GT G+ + +G ++ PV + LGRI N G+PID PI + I +
Sbjct: 114 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSIN 173
Query: 184 FVDMSVQQEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIME------LINNVAK- 342
+ + +E++ TGI +D++ A + + L+ ++ K
Sbjct: 174 PSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKSLEKG 233
Query: 343 --AHGGYS-----VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGA 501
A GG VFA +G + E+G + +V L N+P
Sbjct: 234 KHAEGGEDDNFAIVFAAMGVNMETAQFFKRDFEENGSME------RVTLFLNLANDPTIE 287
Query: 502 RARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATD 681
R LT AEY + G+ VL+ + ++ + A EVSA +P GY + TD
Sbjct: 288 RIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTD 347
Query: 682 MGTMQERI--TTTKKGSITSVQAIYVPADDLTDPAPATT 792
+ T+ ER + GSIT + + +P DD+T P P T
Sbjct: 348 LATIYERAGRIEGRSGSITQIPILTMPNDDITHPTPDLT 386
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 72.5 bits (170), Expect = 4e-13
Identities = 72/289 (24%), Positives = 120/289 (41%), Gaps = 27/289 (9%)
Frame = +1
Query: 7 DGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPIPTDKTAAIH----- 168
+GT G+ + +G ++ PV + LGR+ N G+PID PI + I
Sbjct: 74 EGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPIDNGPPILPEAYLDISDFDIG 133
Query: 169 -AEAPEFVDMSVQ---QEILVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLI------- 315
A A ++ S + +E++ TGI +D++ A +
Sbjct: 134 FAGAGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQA 193
Query: 316 -----MELINNVAKAHGGYS---VFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALV 471
+E +N+ ++ + VFA +G + E+G + +V L
Sbjct: 194 GLVKRLEKSDNILESSEDENFAIVFAAMGVNMETAQFFKRDFEENGSME------RVTLF 247
Query: 472 YGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSA 651
N+P R LT AEY + G+ VL+ + ++ + A EVSA +P
Sbjct: 248 LNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGR 307
Query: 652 VGYQPTLATDMGTMQERI--TTTKKGSITSVQAIYVPADDLTDPAPATT 792
GY + TD+ T+ ER +KGSIT + + +P DD+T P P T
Sbjct: 308 RGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLT 356
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 71.7 bits (168), Expect = 7e-13
Identities = 58/207 (28%), Positives = 93/207 (44%), Gaps = 14/207 (6%)
Frame = +1
Query: 214 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 393
L+TG +V+D L P TV I + ++ + + V+ G GER
Sbjct: 246 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV-ISQALSKYSNSEA--VVYVGCGER--- 299
Query: 394 GNDLYHEMIESGVISL-------KDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 552
GN++ +++ +++ + + LV N P AR TG+T+AEYFRD
Sbjct: 300 GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD 359
Query: 553 QEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTK----- 717
G +V + D+ R+ +A E+S L +P+ GY LA + + ER K
Sbjct: 360 M-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGSP 418
Query: 718 --KGSITSVQAIYVPADDLTDPAPATT 792
GS+T V A+ P D +DP + T
Sbjct: 419 DRTGSVTIVGAVSPPGGDFSDPVTSAT 445
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 70.5 bits (165), Expect = 2e-12
Identities = 56/204 (27%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Frame = +1
Query: 214 LVTGIKVVDLLAPYAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAGVGERTRE 393
L+TG +V+D L P TV I + ++ + + V+ G GER E
Sbjct: 232 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV-ISQALSKYSNSQA--VVYVGCGERGNE 288
Query: 394 GNDLYHEMIESGVISLKDKTSKV----ALVYGQMNEPPGARARVALTGLTVAEYFRDQEG 561
++ + + + + + V LV N P AR TG+T+AEY+RD G
Sbjct: 289 MAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYYRDM-G 347
Query: 562 QDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERI-------TTTKK 720
+V + D+ R+ +A E+S L +P+ GY LA + + ER + +
Sbjct: 348 YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVRCLGSPKRD 407
Query: 721 GSITSVQAIYVPADDLTDPAPATT 792
GS+T V A+ P D +DP + T
Sbjct: 408 GSVTIVGAVSPPGGDFSDPVTSAT 431
>06_03_0913 +
25913231-25913609,25913702-25913775,25914400-25914540,
25914834-25914946,25915359-25915491,25916213-25916351,
25916428-25916527,25916906-25916963,25917122-25917199,
25917278-25917376,25917657-25917735,25917826-25917974,
25918529-25918834,25918994-25919032
Length = 628
Score = 30.7 bits (66), Expect = 1.6
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 520 TGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTL 672
TGLT A+ D+ + V F+DN R G + + G++ S +G P L
Sbjct: 260 TGLTPAQLAADKSHRQVAFFLDNAKRVYDRGCDGNTNFGKL-SKLGLAPVL 309
>11_06_0693 - 26334574-26336121
Length = 515
Score = 30.3 bits (65), Expect = 2.1
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -1
Query: 259 WHKERADRRLLYQLRESPAAQTCRQTLEL 173
WH A+RRLL+ L SP A+ R+ LEL
Sbjct: 20 WHPRTAERRLLHLLHHSPPAR--RRPLEL 46
>02_05_1214 + 34976814-34979813
Length = 999
Score = 30.3 bits (65), Expect = 2.1
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +3
Query: 198 CAAGDSRNWYKSRRSARSLCQRWKDWVVWRSWCGQNCIDYGTDQQC 335
C A + W ++R S+C RW + W + I G C
Sbjct: 614 CVAKYGQKWIRTRTVVDSVCPRWNEQYTWEVFDPCTVITVGVFDNC 659
>09_04_0159 + 15213752-15214028,15214158-15214399
Length = 172
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Frame = +3
Query: 177 SRVCRHVCAAGDSRNW-YKSRRSARSLCQRWKDWVVWRSWCGQN--CIDYGTDQQCCQSP 347
+ R CA D W ++ AR+ +R D + WR C D G+ CC P
Sbjct: 107 AEAARRPCA-DDGGGWTWRRSGPARARARRHGDLLRWRRTLAAQRPCADDGSVGTCCGGP 165
Query: 348 WWLL 359
W L
Sbjct: 166 AWAL 169
>09_02_0465 - 9594866-9595672,9596036-9597496
Length = 755
Score = 29.5 bits (63), Expect = 3.8
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Frame = +1
Query: 439 LKDKTSKVALVYGQMNEPPGARARVALTGLTVA-------EYFRDQEGQDVLLFIDNIFR 597
LK + K+A+ YG +N PPG RV + L V +Y EG+ +LL N F
Sbjct: 684 LKYHSEKLAVAYGILNIPPGRPIRV-IKNLRVCGDCHNAFKYISAIEGRLILLRDSNRFH 742
Query: 598 FTQAGS 615
+ GS
Sbjct: 743 HFRGGS 748
>07_03_0251 +
15831712-15832127,15832203-15832344,15832692-15833056,
15833134-15833293,15833699-15834036,15834138-15834315,
15834454-15834987,15835176-15836291
Length = 1082
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 340 KAHGGYSVFAGVGERTREGNDLYHEMIESGVISLKDKTSKVALVYGQMNEPPGARARVAL 519
+ H G S +A + RT L ++ E + + + V+G++NEP G +A + L
Sbjct: 67 RPHSG-SNYAVLTRRTHNWQGLEQDITEKVTVGTEYIVAAHVRVHGELNEPVGIQATLKL 125
Query: 520 TG 525
G
Sbjct: 126 EG 127
>02_02_0179 +
7500647-7500779,7503021-7503222,7503356-7503427,
7503655-7503726,7504212-7504283,7504711-7504782,
7505045-7505116,7505209-7505280,7505688-7505759,
7506215-7506292,7506670-7506729,7506810-7506848,
7506949-7506998,7507110-7507480,7508467-7508662,
7508856-7508936,7509694-7509848,7510302-7510512,
7510648-7510882,7510995-7511145,7511813-7512181
Length = 944
Score = 29.5 bits (63), Expect = 3.8
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 586 NIFRFTQAGSEVSALLGRIPSAVGYQPTLATDM--GTMQERITTTKKGSITSVQAIYVPA 759
N+ T + + + G +P +G P L + G E + G+I S++ ++ A
Sbjct: 129 NLTYLTNLSLQGNRISGTVPKELGRMPFLKSINLEGNQLEGHIPPEFGNIISLERFFISA 188
Query: 760 DDLTDPAPAT 789
+D+T P+T
Sbjct: 189 NDITGELPST 198
>01_06_0876 -
32654209-32654238,32654357-32654672,32654833-32654901,
32655238-32655275,32655418-32655478,32655550-32655617,
32655729-32655889,32656687-32656751,32656883-32656956,
32658158-32658245,32658800-32658879,32659168-32659224,
32659332-32659404,32659524-32659762,32659846-32660025,
32660150-32660440
Length = 629
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +1
Query: 592 FRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTTKKGSITSVQA 744
F + + LG+I +G QP GT +R TT++ ++ VQA
Sbjct: 238 FHLYKENKDTQEALGKIGKMLGLQPRSFGFAGTKDKRAVTTQQVTVFKVQA 288
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 29.1 bits (62), Expect = 5.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -3
Query: 119 GSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVP 9
GSP+ R + AP G+ G+P++ ++PS+P
Sbjct: 452 GSPVYAQSRSPIRAPLGVSFGDPKAQ----NSRPSIP 484
>12_02_0233 -
16023062-16023253,16023528-16023609,16023699-16023809,
16023890-16024141,16024227-16024580,16024893-16025548,
16025554-16026459,16026550-16026747
Length = 916
Score = 29.1 bits (62), Expect = 5.0
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = +1
Query: 664 PTLATD--MGTMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFGSLG 807
P L TD T + TT S+ SVQ P D +T P P + +G
Sbjct: 421 PRLFTDGQQPTQSAQQTTNVPSSVGSVQTTPFPVDSITGPTPCSLVVPIG 470
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 29.1 bits (62), Expect = 5.0
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 688 TMQERITTTKKGSITSVQAIYVPADDLTDPAPATTFGSLG 807
T E+ TT S+ SV+ P D +T P P + +G
Sbjct: 230 TQSEQQTTNVPNSVGSVETTPFPVDSITGPTPCSLIVPIG 269
>05_02_0100 +
6594787-6594878,6595443-6595728,6595809-6595887,
6595964-6596013,6597281-6597478,6597555-6597612,
6598388-6598496,6599253-6599321,6599684-6599812,
6599970-6600082,6600386-6600479,6602827-6602917,
6604145-6604233,6604715-6604856,6605849-6606196,
6606314-6607408
Length = 1013
Score = 28.7 bits (61), Expect = 6.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 7 DGTEGLVRGQPVLDSGSPIRIPVGAE-TLGRIINVIGEPIDERGPI 141
D E + P S S +P AE L I NV+GE +D+ GP+
Sbjct: 131 DSEEESLPSSPETSSTSNYDMPDLAEQNLEHIYNVLGEMVDKEGPV 176
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 28.7 bits (61), Expect = 6.6
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -3
Query: 239 STTFIPVTRISCC--TDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGI 66
S+ F+P+ +S TD++T SGA +W VL + IG + + RV +
Sbjct: 152 SSLFLPLYFVSSGLKTDVTTISGAKSWGLLVLVMTTACAGKIGGTVAASLLMRVPLREAL 211
Query: 65 RMG 57
+G
Sbjct: 212 ALG 214
>10_08_0685 -
19875801-19875980,19876074-19876277,19876392-19876724,
19876834-19877115,19877210-19877425,19879752-19880024
Length = 495
Score = 28.3 bits (60), Expect = 8.7
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Frame = -2
Query: 219 YENLLLHRHVDKLWS--FGMDSSSLVGWDGTALVNRFADYIDDASE 88
++ L+L +D +++ FG D ++L DG+ +RFA DDASE
Sbjct: 162 FQGLMLRATMDSIFTIAFGTDLNTL---DGSGEGSRFAAAFDDASE 204
>07_03_0094 + 13335281-13335412,13337125-13337208,13337517-13338323
Length = 340
Score = 28.3 bits (60), Expect = 8.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 294 CGQNCIDYGTDQQCCQ 341
C C+ +GTD+QCC+
Sbjct: 268 CKSACLAFGTDEQCCR 283
>07_01_0702 +
5288588-5288889,5289257-5289407,5289543-5289725,
5290063-5290137,5290248-5290403,5290502-5290597,
5290855-5290985,5291057-5291138,5291237-5291586,
5293029-5293234,5293254-5293570
Length = 682
Score = 28.3 bits (60), Expect = 8.7
Identities = 19/55 (34%), Positives = 27/55 (49%)
Frame = -3
Query: 785 AGAGSVKSSAGT*IACTDVMEPFLVVVILSCIVPMSVARVG*YPTADGIRPSRAD 621
+GA +V+ SA +A T + P L + L C P+ V R A G+R AD
Sbjct: 31 SGAAAVRCSA---VAPTSAIAPILADLRLRCAAPLPVLRRVADAMASGMRAGLAD 82
>06_02_0176 +
12637287-12637376,12638108-12638280,12638631-12638743,
12639125-12639313,12639397-12639464,12639601-12639684,
12639791-12639844,12640445-12640525,12640615-12640708,
12640830-12640903,12640976-12641086,12641299-12641355,
12641458-12641562,12641656-12641772,12641900-12642003,
12642229-12642394,12642513-12642641
Length = 602
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 141 PNRQDCCYPCRSSRVCRHVCAAGDSRNWYKSRRSARSLCQRWK 269
P++ DC Y VC H+ AAG + + + RS +WK
Sbjct: 422 PSKFDCDYAYVLGHVCYHILAAG-LNGYMATVTNLRSPVNKWK 463
>01_06_0038 - 25819433-25820344
Length = 303
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/67 (20%), Positives = 27/67 (40%)
Frame = +3
Query: 159 CYPCRSSRVCRHVCAAGDSRNWYKSRRSARSLCQRWKDWVVWRSWCGQNCIDYGTDQQCC 338
C + C AA + S S+ + ++ + VWR++C Y ++C
Sbjct: 167 CERAKGGGACAFPTAAAAPSSSSSSSSSSSAGGRKLVEETVWRAYCNGRSCGYAVRRECG 226
Query: 339 QSPWWLL 359
+ W +L
Sbjct: 227 AADWRVL 233
>01_05_0159 +
18716055-18716272,18716900-18718529,18718622-18718693,
18718800-18719213
Length = 777
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 111 DYIDDASEGFSSHRDTNG*ARVEYGL 34
DY+D A +G S H+ G + YGL
Sbjct: 177 DYVDPADQGSSDHKSIKGSLNLFYGL 202
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,516,660
Number of Sequences: 37544
Number of extensions: 604331
Number of successful extensions: 2055
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2049
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -